fix commercial div figure for presentation

chunk-scripts/LTL_MAB.Rmd-pp-monthly.R

@@ -27,6 +27,7 @@ pp_cci <- ggplot2::ggplot(out_pp) +
     ggplot2::ggtitle("Monthly median PPD") +
     ggplot2::ylab(expression("PP (gC m"^-2*" d"^-1*")")) +
     ecodata::theme_facet() +
+    ggplot2::ylab("Time")+
     ggplot2::theme(axis.text.x = element_text(angle=45, hjust = 1),
           panel.spacing = unit(0.5, "lines"),
           plot.margin = unit(c(0.1, 0, 0, 0), "cm"))+

chunk-scripts/LTL_MAB.Rmd-setup.R

@@ -4,8 +4,7 @@ image.dir<- here::here("docs/images")
 knitr::opts_chunk$set(echo = FALSE,
                       message = FALSE,
                       warning = FALSE,
-                      fig.align = 'center', 
-                      fig.path = "docs/images/") #allows for inserting R code into captions
+                      fig.align = 'center') #allows for inserting R code into captions
 
 #Plotting and data libraries
 library(ggplot2)

chunk-scripts/human_dimensions_NE.Rmd-commercial-div-species-div.R

@@ -18,7 +18,7 @@ comm_div %>%
   ggplot2::geom_point(aes(x = Time, y = Value, color = Var), size = pcex) +
 
   ggplot2::scale_x_continuous(expand = c(0.01, 0.01)) +
-  ggplot2::scale_color_manual(values = series.col, aesthetics = "color")+
+  ggplot2::scale_color_manual(values = "black", aesthetics = "color")+
   ggplot2::guides(color = FALSE) +
   ggplot2::ggtitle("Permit revenue species diversity")+
   ggplot2::ylab(expression("Effective Shannon")) +

docs/human_dimensions_NE.Rmd

@@ -929,7 +929,7 @@ comm_div %>%
   ggplot2::geom_point(aes(x = Time, y = Value, color = Var), size = pcex) +
 
   ggplot2::scale_x_continuous(expand = c(0.01, 0.01)) +
-  ggplot2::scale_color_manual(values = series.col, aesthetics = "color")+
+  ggplot2::scale_color_manual(values = "black", aesthetics = "color")+
   ggplot2::guides(color = FALSE) +
   ggplot2::ggtitle("Permit revenue species diversity")+
   ggplot2::ylab(expression("Effective Shannon")) +

docs/human_dimensions_NE.html

@@ -13,7 +13,7 @@
 
 <title>Human Dimensions GB and GOM</title>
 
-<script src="libs/header-attrs-2.11/header-attrs.js"></script>
+<script src="libs/header-attrs-2.13/header-attrs.js"></script>
 <script src="libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
 <meta name="viewport" content="width=device-width, initial-scale=1" />
 <link href="libs/bootstrap-3.3.5/css/lumen.min.css" rel="stylesheet" />
@@ -63,6 +63,7 @@
 
 
 
+
 <style type = "text/css">
 .main-container {
   max-width: 940px;
@@ -84,6 +85,9 @@
 summary {
   display: list-item;
 }
+details > summary > p:only-child {
+  display: inline;
+}
 pre code {
   padding: 0;
 }