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Add the capability to assimilate the MADIS snow depth for global-workflow #602

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846c9ce
Prepare GTS snow depth observations for JEDI-based Land DA (#541)
jiaruidong2017 Jul 24, 2023
597b970
Filtering of the offline ensemble members, and more ... (#539)
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test
jiaruidong2017 Aug 23, 2023
4381583
Initialize the madis snow DA in GDASApp for Global-Workflow.
jiaruidong2017 Aug 23, 2023
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Merge branch 'develop' into feature/madis_da
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9825f94
Made changes for global-workflow.
jiaruidong2017 Sep 9, 2023
a4e02ea
Add temporal thinning filter for madis data
jiaruidong2017 Sep 12, 2023
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Update the temporal thinning filter.
jiaruidong2017 Sep 12, 2023
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Merge branch 'develop' into feature/madis_da
CoryMartin-NOAA Sep 12, 2023
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102 changes: 102 additions & 0 deletions parm/land/obs/config/snocvr_snow.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,102 @@
obs space:
name: snocvr_snow
distribution:
name: Halo
halo size: 250e3
obsdatain:
engine:
type: H5File
obsfile: $(DATA)/obs/$(OPREFIX)snocvr_snow.nc4
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obsdataout:
engine:
type: H5File
obsfile: $(DATA)/diags/diag_snocvr_snow.nc4
simulated variables: [totalSnowDepth]
obs operator:
name: Composite
components:
- name: Identity
- name: BackgroundErrorIdentity
obs error:
covariance model: diagonal
obs localizations:
- localization method: Horizontal SOAR
lengthscale: 250e3
soar horizontal decay: 0.000021
max nobs: 50
- localization method: Vertical Brasnett
vertical lengthscale: 700
obs filters:
- filter: Bounds Check
filter variables:
- name: totalSnowDepth
minvalue: 0.0
maxvalue: 2000.0
action:
name: reject
- filter: Domain Check
where:
- variable:
name: MetaData/height
minvalue: -999.0
- filter: Domain Check # land only
where:
- variable:
name: GeoVaLs/slmsk
minvalue: 0.5
maxvalue: 1.5
- filter: RejectList # no land-ice
where:
- variable:
name: GeoVaLs/vtype
minvalue: 14.5
maxvalue: 15.5
- filter: Temporal Thinning
min_spacing: $(LAND_WINDOW_LENGTH)
seed_time: '{{ current_cycle | to_isotime }}'
category_variable:
name: MetaData/stationIdentification
- filter: Background Check # gross error check
filter variables:
- name: totalSnowDepth
threshold: 6.25
action:
name: reject
- filter: Met Office Buddy Check
filter variables:
- name: totalSnowDepth
rejection_threshold: 0.5
traced_boxes: # trace all observations
min_latitude: -90
max_latitude: 90
min_longitude: -180
max_longitude: 180
search_radius: 150 # km
station_id_variable:
name: MetaData/stationIdentification
num_zonal_bands: 24
sort_by_pressure: false
max_total_num_buddies: 15
max_num_buddies_from_single_band: 10
max_num_buddies_with_same_station_id: 5
use_legacy_buddy_collector: false
horizontal_correlation_scale: { "-90": 150, "90": 150 }
temporal_correlation_scale: PT6H
damping_factor_1: 1.0
damping_factor_2: 1.0
background_error_group: BkgError
- filter: Perform Action
filter variables:
- name: totalSnowDepth
action:
name: assign error
error parameter: 40.0
- filter: Variable Assignment
assignments:
- name: GrossErrorProbability/totalSnowDepth
type: float
value: 0.02
- name: BkgError/totalSnowDepth_background_error
type: float
value: 30.0

3 changes: 3 additions & 0 deletions parm/land/obs/lists/gdas_land_gts_only.yaml
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@@ -0,0 +1,3 @@
observers:
- !INC ${OBS_YAML_DIR}/adpsfc_snow.yaml
- !INC ${OBS_YAML_DIR}/snocvr_snow.yaml
1 change: 1 addition & 0 deletions parm/land/obs/lists/gdas_land_prototype.yaml
Original file line number Diff line number Diff line change
@@ -1,3 +1,4 @@
observers:
- !INC ${OBS_YAML_DIR}/adpsfc_snow.yaml
- !INC ${OBS_YAML_DIR}/snocvr_snow.yaml
- !INC ${OBS_YAML_DIR}/ims_snow.yaml
6 changes: 5 additions & 1 deletion parm/land/prep/prep_gts.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,11 @@ gtsbufr:
- $(DATA)/obs
copy:
- [$(COM_OBS)/$(OPREFIX)adpsfc.tm00.bufr_d, $(DATA)/obs/]
- [$(COM_OBS)/$(OPREFIX)snocvr.tm00.bufr_d, $(DATA)/obs/]
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gtsioda:
copy:
- [$(DATA)/$(OPREFIX)adpsfc_snow.nc4, $(COM_OBS)/$(OPREFIX)adpsfc_snow.nc4]

- [$(DATA)/$(OPREFIX)snocvr_snow.nc4, $(COM_OBS)/$(OPREFIX)snocvr_snow.nc4]
bufr2ioda:
adpsfc: {{ HOMEgfs }}/sorc/gdas.cd/test/testinput/bufr_adpsfc_snow.yaml
snocvr: {{ HOMEgfs }}/sorc/gdas.cd/test/testinput/bufr_snocvr_snow.yaml
85 changes: 85 additions & 0 deletions test/testinput/bufr_snocvr_snow.yaml
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@@ -0,0 +1,85 @@
# (C) Copyright 2021-2022 NOAA/NWS/NCEP/EMC
#
# This software is licensed under the terms of the Apache Licence Version 2.0
# which can be obtained at http://www.apache.org/licenses/LICENSE-2.0.
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observations:
- obs space:
name: bufr

obsdatain: $(DATA)/obs/$(OPREFIX)snocvr.tm00.bufr_d
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exports:
variables:
# MetaData
timestamp:
datetime:
year: "*/YEAR[1]"
month: "*/MNTH[1]"
day: "*/DAYS[1]"
hour: "*/HOUR[1]"
minute: "*/MINU[1]"
latitude:
query: "[*/CLAT, */CLATH]"
longitude:
query: "[*/CLON, */CLONH]"
stationIdentification:
query: "*/WGOSLID"

height:
query: "[*/SELV, */HSMSL]"

# ObsValue
totalSnowDepth:
query: "*/TOSD"
transforms:
- scale: 1000.0
filters:
- bounding:
variable: totalSnowDepth
upperBound: 10000000

ioda:
backend: netcdf
obsdataout: $(DATA)/$(OPREFIX)snocvr_snow.nc4

variables:

# MetaData
- name: "MetaData/dateTime"
coordinates: "longitude latitude"
source: variables/timestamp
longName: "Datetime"
units: "seconds since 1970-01-01T00:00:00Z"

- name: "MetaData/latitude"
coordinates: "longitude latitude"
source: variables/latitude
longName: "Latitude"
units: "degree_north"
range: [-90, 90]

- name: "MetaData/longitude"
coordinates: "longitude latitude"
source: variables/longitude
longName: "Longitude"
units: "degree_east"
range: [-180, 180]

- name: "MetaData/height"
coordinates: "longitude latitude"
source: variables/height
longName: "Height of Station"

- name: "MetaData/stationIdentification"
coordinates: "longitude latitude"
source: variables/stationIdentification
longName: "Identification of Observing Location"
units: "m"

# ObsValue
- name: "ObsValue/totalSnowDepth"
coordinates: "longitude latitude"
source: variables/totalSnowDepth
longName: "Total Snow Depth"
units: "mm"
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