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Fix test_read_input_nml2 failure and test_diag_update_buffer.F90 seg fault : Cray #2292

Fix test_read_input_nml2 failure and test_diag_update_buffer.F90 seg fault : Cray

Fix test_read_input_nml2 failure and test_diag_update_buffer.F90 seg fault : Cray #2292

name: Build libFMS test with autotools
on: [push, pull_request]
jobs:
build:
runs-on: ubuntu-latest
defaults:
run:
shell: bash
strategy:
matrix:
conf-flags: [--disable-openmp, --enable-mixed-mode, --disable-setting-flags, --with-mpi=no]
input-flag: [--with-yaml, --enable-test-input=/home/unit_tests_input]
io-flag: [ --enable-deprecated-io, --disable-deprecated-io]
container:
image: noaagfdl/hpc-me.ubuntu-minimal:gnu-input
env:
TEST_VERBOSE: 1
DISTCHECK_CONFIGURE_FLAGS: "${{ matrix.conf-flags }} ${{ matrix.input-flag }} ${{ matrix.io-flag }}"
steps:
- name: Checkout code
uses: actions/checkout@v2
- name: Prepare GNU autoconf for build
run: autoreconf -if
- name: Configure the build
if: ${{ matrix.conf-flags != '--disable-setting-flags' }}
run: ./configure ${DISTCHECK_CONFIGURE_FLAGS} || cat config.log
- name: Configure the build with compiler flags
if: ${{ matrix.conf-flags == '--disable-setting-flags' }}
run: ./configure ${DISTCHECK_CONFIGURE_FLAGS} FCFLAGS="-fdefault-real-8 -fdefault-double-8 -fcray-pointer -ffree-line-length-none -I/usr/include $FCFLAGS" || cat config.log
- name: Build the library
run: make distcheck
if: ${{ matrix.conf-flags != '--with-mpi=no' }}
- name: Build the library (without test suite for serial build)
run: make
if: ${{ matrix.conf-flags == '--with-mpi=no' }}