updated github CI file #31
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| name: Run tests with miniconda | |
| on: [push] | |
| jobs: | |
| test: | |
| name: Miniconda ${{ matrix.os }} Py${{ matrix.pyver }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| #os: ["ubuntu-latest", "windows-latest","macos-latest"] | |
| os: ["windows-latest","macos-latest"] | |
| pyver: ["3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: test | |
| # environment-file: environment.yml | |
| python-version: ${{ matrix.pyver }} | |
| auto-activate-base: false | |
| - shell: bash -l {0} | |
| run: | | |
| conda config --add channels conda-forge | |
| - name: Setup environment | |
| shell: bash -l {0} | |
| run: | | |
| git clone --depth 1 -b develop https://github.com/NOAA-ORR-ERD/adios_oil_database.git oil_database | |
| conda install -y mamba | |
| cd ./py_gnome | |
| echo "Setting up conda environment" | |
| mamba install -y python=${{ matrix.pyver }} \ | |
| --file conda_requirements.txt \ | |
| --file conda_requirements_build.txt \ | |
| --file conda_requirements_test.txt \ | |
| --file ../oil_database/adios_db/conda_requirements.txt | |
| - name: Build Our Packages | |
| shell: bash -l {0} | |
| run: | | |
| pwd | |
| ls -la | |
| pip install ./oil_database/adios_db/ | |
| cd ./py_gnome | |
| python -m pip install ./ | |
| - name: Run pytest | |
| shell: bash -l {0} | |
| run: | | |
| cd ./py_gnome/tests/unit_tests | |
| pytest --runslow | |
| - name: Build wheel file | |
| shell: bash -l {0} | |
| run: | | |
| cd ./py_gnome | |
| python -m pip wheel ./ | |
| - name: Copy files to artifact folder | |
| shell: bash -l {0} | |
| run: | | |
| mkdir installable_wheel_${{ matrix.os }}_Py${{ matrix.pyver }} | |
| cp ./py_gnome/*.whl installable_wheel_${{ matrix.os }}_Py${{ matrix.pyver }} | |
| cp ./py_gnome/conda_requirements.txt installable_wheel_${{ matrix.os }}_Py${{ matrix.pyver }} | |
| - name: Upload Artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: installable-wheel-${{ matrix.os }}-Py${{ matrix.pyver }} | |
| path: installable_wheel_${{ matrix.os }}_Py${{ matrix.pyver }} | |
| lint: | |
| name: Flake8 linting | |
| runs-on: "ubuntu-latest" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: lint | |
| python-version: 3.12 | |
| auto-activate-base: false | |
| - shell: bash -l {0} | |
| run: | | |
| conda config --add channels conda-forge | |
| - name: Lint | |
| shell: bash -l {0} | |
| run: | | |
| conda install flake8 | |
| python -m flake8 --exit-zero --statistics py_gnome/gnome/ |