Qs main

.ci/bl-specific.sh

@@ -2,4 +2,17 @@
 
 # cp -v <...> ~/.ipython/profile_${TEST_PROFILE}/
 
-conda install -y -c ${CONDA_CHANNEL_NAME} 28-id-1-pdf-collection
+# xpdacq is already installed in the 'collection-2021-1.2' conda env.
+if [ "$CONDA_ENV_NAME" == "collection-2021-1.0" ]; then
+    conda install -y -c ${CONDA_CHANNEL_NAME} xpdacq
+fi
+
+mkdir -v -p ~/.config/acq/
+mkdir -v -p ~/user_data/config_base/yml/
+sudo mkdir -v -p /mnt/data/bnl/xpdacq_special/data/xpdConfig/
+sudo chown -Rv $USER: /mnt/data/bnl/xpdacq_special/data/xpdConfig/
+
+cp -v .ci/pdf.yml ~/.config/acq/
+cp -v .ci/glbl.yml ~/user_data/config_base/yml/
+cp -v .ci/xpd_beamline_config.yml /mnt/data/bnl/xpdacq_special/data/xpdConfig/
+

.ci/glbl.yml

@@ -0,0 +1,158 @@
+_dark_dict_list:
+- acq_time: 5
+  exposure: 5
+  timestamp: 1614460063.2800422
+  uid: 37d192fb-df2c-44a9-b41b-2a05c9751247
+- acq_time: 5
+  exposure: 5
+  timestamp: 1614460242.3911414
+  uid: cf374ae7-2ed5-4e5d-9563-f4841a3759e9
+- acq_time: 5
+  exposure: 5
+  timestamp: 1614460464.3035522
+  uid: 5fc90d2e-ef96-4ca7-9207-ae72121923d0
+- acq_time: 5
+  exposure: !!python/object/apply:numpy.core.multiarray.scalar
+  - &id001 !!python/object/apply:numpy.dtype
+    args:
+    - f8
+    - false
+    - true
+    state: !!python/tuple
+    - 3
+    - <
+    - null
+    - null
+    - null
+    - -1
+    - -1
+    - 0
+  - !!binary |
+    AAAAAAAAFEA=
+  timestamp: 1614460566.1485345
+  uid: 12c2f3ca-b459-4180-a12e-2b2d4b6d5aa8
+- acq_time: 5
+  exposure: !!python/object/apply:numpy.core.multiarray.scalar
+  - *id001
+  - !!binary |
+    AAAAAAAAFEA=
+  timestamp: 1614464054.0055833
+  uid: 5bf51ebe-6439-4815-a9bb-0c824fd3afe8
+- acq_time: 5
+  exposure: !!python/object/apply:numpy.core.multiarray.scalar
+  - *id001
+  - !!binary |
+    AAAAAAAAFEA=
+  timestamp: 1614464263.5876548
+  uid: 25d95820-b20f-4d37-901d-6c96c86462a1
+- acq_time: 5
+  exposure: !!python/object/apply:numpy.core.multiarray.scalar
+  - *id001
+  - !!binary |
+    AAAAAAAAFEA=
+  timestamp: 1614464433.3411603
+  uid: bb969c1c-2e41-4914-91db-3440b576c752
+- acq_time: 5
+  exposure: !!python/object/apply:numpy.core.multiarray.scalar
+  - *id001
+  - !!binary |
+    AAAAAAAAFEA=
+  timestamp: 1614464443.6444564
+  uid: 319ccd2f-7483-459c-96ac-e308b150006e
+_exclude_dir:
+- /mnt/data/bnl/xpdacq_special/data/user_data
+- /mnt/data/bnl/xpdacq_special/data/xpdConfig
+- /mnt/data/bnl/xpdacq_special/data/user_data/config_base/yml
+_export_tar_dir:
+- /mnt/data/bnl/xpdacq_special/data/user_data/config_base
+- /mnt/data/bnl/xpdacq_special/data/user_data/userScripts
+all_folders: &id002
+- /mnt/data/bnl/xpdacq_special/data/user_data
+- /mnt/data/bnl/xpdacq_special/data/xpdConfig
+- /mnt/data/bnl/xpdacq_special/data/user_data/config_base/yml
+- /mnt/data/bnl/xpdacq_special/data/user_data/config_base
+- /mnt/data/bnl/xpdacq_special/data/user_data/config_base/yml/samples
+- /mnt/data/bnl/xpdacq_special/data/user_data/config_base/yml/scanplans
+- /mnt/data/bnl/xpdacq_special/data/user_data/tiff_base
+- /mnt/data/bnl/xpdacq_special/data/user_data/userScripts
+- /mnt/data/bnl/xpdacq_special/data/user_data/Import
+- /mnt/data/bnl/xpdacq_special/data/user_data/userAnalysis
+allfolders: *id002
+archive_base_dir: /mnt/data/bnl/xpdacq_special/archive/.userbeamtimearchive
+archive_base_dir_name: .userbeamtimearchive
+archive_dir: /mnt/data/bnl/xpdacq_special/archive/.userbeamtimearchive/2021
+archive_root_dir: /mnt/data/bnl/xpdacq_special/archive
+auto_dark: true
+auto_load_calib: true
+base: /mnt/data/bnl/xpdacq_special/data
+base_dir: /mnt/data/bnl/xpdacq_special/data
+beamline_host_name:
+- jupiter
+beamline_id: 28-ID-1
+blconfig_dir: /mnt/data/bnl/xpdacq_special/data/xpdConfig
+blconfig_dir_name: xpdConfig
+blconfig_name: xpd_beamline_config.yml
+blconfig_path: /mnt/data/bnl/xpdacq_special/data/xpdConfig/xpd_beamline_config.yml
+bt_dir: /mnt/data/bnl/xpdacq_special/data/user_data/config_base/yml
+calib_config_name: xpdAcq_calib_info.yml
+config_base: /mnt/data/bnl/xpdacq_special/data/user_data/config_base
+dark_field_key: sc_dk_field_uid
+dark_window: 0.1
+det_image_field: &id003
+- pe1c_image
+- pe2c_image
+- dexela_image
+- dexela
+diffraction_dets:
+- pe1c
+- pe1
+- pe2c
+- pe2
+- dexela_image
+- dexela
+dk_window: 0.1
+exp_broker_name: pdf
+exp_hash_uid: f4be92ca-79c1-49ae-9bcd-59c7a8185aa3
+facility: NSLS-II
+frame_acq_time: 0.1
+frame_acquire_time: 0.1
+glbl_yaml_name: glbl.yml
+glbl_yaml_path: /mnt/data/bnl/xpdacq_special/data/user_data/config_base/yml/glbl.yml
+group: XPD
+home: /mnt/data/bnl/xpdacq_special/data/user_data
+home_dir: /mnt/data/bnl/xpdacq_special/data/user_data
+home_dir_name: user_data
+image_field: pe1c_image
+image_fields: *id003
+import_dir: /mnt/data/bnl/xpdacq_special/data/user_data/Import
+inbound_proxy_address: xf28id1-ca1:5577
+is_simulation: false
+mask_kwargs:
+  alpha: 3.0
+  bs_width: 13
+  edge: 30
+  lower_thresh: 0.0
+  tri_offset: 13
+  v_asym: 0
+name: glbl
+outbound_proxy_address: xf28id1-ca1:5578
+owner: PDF
+radiogram_dets:
+- blackfly_det
+radiograph_names:
+- blackfly_det
+sample_dir: /mnt/data/bnl/xpdacq_special/data/user_data/config_base/yml/samples
+scanplan_dir: /mnt/data/bnl/xpdacq_special/data/user_data/config_base/yml/scanplans
+shutter_conf:
+  close: 0
+  open: 1
+shutter_control: true
+shutter_sleep: 0
+simulation: false
+tiff_base: /mnt/data/bnl/xpdacq_special/data/user_data/tiff_base
+user_backup_dir_name: '2021'
+userscript_dir: /mnt/data/bnl/xpdacq_special/data/user_data/userScripts
+usrAnalysis_dir: /mnt/data/bnl/xpdacq_special/data/user_data/userAnalysis
+usrScript_dir: /mnt/data/bnl/xpdacq_special/data/user_data/userScripts
+xpdconfig: /mnt/data/bnl/xpdacq_special/data/xpdConfig
+yaml_dir: /mnt/data/bnl/xpdacq_special/data/user_data/config_base/yml

.ci/pdf.yml

@@ -0,0 +1,35 @@
+archive_base_dir_name: .userbeamtimearchive
+archive_root_dir: /mnt/data/bnl/xpdacq_special/archive
+base_dir: /mnt/data/bnl/xpdacq_special/data
+beamline_host_name: [jupiter]
+beamline_id: 28-ID-1
+blconfig_dir_name: xpdConfig
+blconfig_name: xpd_beamline_config.yml
+calib_config_name: xpdAcq_calib_info.yml
+dark_window: 0.1
+facility: NSLS-II
+frame_acquire_time: 0.1
+glbl_yaml_name: glbl.yml
+group: XPD
+home_dir_name: user_data
+image_field: pe1c_image
+owner: PDF
+simulation: false
+shutter_conf: {close: 0, open: 1}
+mask_kwargs:
+  edge: 30
+  lower_thresh: 0.0
+  bs_width: 13
+  tri_offset: 13
+  v_asym: 0
+  alpha: 3.0
+dark_field_key : sc_dk_field_uid
+det_image_field : pe1_image
+exp_broker_name: pdf
+outbound_proxy_address: 'xf28id1-ca1:5578'
+inbound_proxy_address: 'xf28id1-ca1:5577'
+shutter_sleep: 0
+diffraction_dets: ['pe1c', 'pe1', 'pe2c', 'pe2','dexela_image', 'dexela']
+radiograph_names : ['blackfly_det']
+radiogram_dets: ['blackfly_det']
+image_fields: ['pe1c_image', 'pe2c_image', 'dexela_image', 'dexela']

.ci/xpd_beamline_config.yml

@@ -0,0 +1,4 @@
+Verification time: '2021-01-09 17:45:59'
+Verified by: AUTO VERIFIED IN TEST
+hadtoedit: false
+is_pytest: false

.gitignore

@@ -86,3 +86,5 @@ db/
 static/
 history.sqlite
 Link\ to\ startup
+
+.vscode/

azure-pipelines.yml

@@ -3,10 +3,13 @@ resources:
     - repository: templates
       type: github
       name: NSLS-II/profile-collection-ci
-      # ref: refs/heads/<branch-name>  # for future testings on a branch of NSLS-II/profile-collection-ci
+      ref: refs/heads/main
       endpoint: github
 
 jobs:
-- template: azure-linux.yml@templates  # Template reference
-  parameters:
-    beamline_acronym: PDF
+  - template: collection-2021-1.0.yml@templates
+    parameters:
+      beamline_acronym: PDF
+  - template: collection-2021-1.2.yml@templates
+    parameters:
+      beamline_acronym: PDF

env_vars/client_side_qserver_extra

@@ -0,0 +1,7 @@
+conda activate 2021-3.1-py37
+OVERLAY=/nsls2/data/pdf/shared/config/bluesky_overlays/2021-3.1-py37
+PATH=$OVERLAY/bin:$PATH
+PYTHONPATH=$OVERLAY/lib/python3.7/site-packages:$PYTHONPATH
+export PATH
+export PYTHONPATH
+export BS_ENV=/nsls2/data/pdf/shared/config/profile_collection

env_vars/qserver_extra

@@ -0,0 +1,2 @@
+export PYTHONPATH=/home/xf28id1/bluesky_overlays/lib/python3.9/site-packages/
+export QSERVER_STARTUP_DIR=/nsls2/data/pdf/shared/config/profile_collection/startup

scripts/ramp_ioc.py

@@ -0,0 +1,35 @@
+#!/usr/bin/env python3
+from textwrap import dedent
+
+from caproto.server import PVGroup, ioc_arg_parser, pvproperty, run
+
+
+class SimpleIOC(PVGroup):
+    """
+    An IOC with three uncoupled read/writable PVs
+
+    Scalar PVs
+    ----------
+    A (int)
+    B (float)
+
+    Vectors PVs
+    -----------
+    C (vector of int)
+    """
+
+    done = pvproperty(
+        value=0,
+        doc="An integer to track if the ramp should be done.",
+        name="RampDone-Cmd",
+    )
+    delta = pvproperty(value=0.1, doc="The delta of the ramp rate.", name="RampDelta")
+    take = pvproperty(value=0, doc="If XRD data should be taken", name="TakeXRD-Cmd",)
+
+
+if __name__ == "__main__":
+    ioc_options, run_options = ioc_arg_parser(
+        default_prefix="OvenRampControl:", desc=dedent(SimpleIOC.__doc__)
+    )
+    ioc = SimpleIOC(**ioc_options)
+    run(ioc.pvdb, **run_options)

scripts/robo_dan.py

@@ -0,0 +1,48 @@
+from ophyd import Device, Component as Cpt, EpicsSignal
+import time
+import datetime
+
+
+class RampControl(Device):
+    delta = Cpt(EpicsSignal, "RampDelta")
+    done = Cpt(EpicsSignal, "RampDone-Cmd")
+    take_xrd = Cpt(EpicsSignal, "TakeXRD-Cmd")
+
+
+temperature = EpicsSignal("XF:28ID1-ES{LS336:1-Chan:C}T-I")
+ramp_control = RampControl("OvenRampControl:", name="ramp_control")
+power_rbv = EpicsSignal("XF:28ID1-ES{LS336:1-Out:3}Out:Man-RB")
+power_sp = EpicsSignal("XF:28ID1-ES{LS336:1-Out:3}Out:Man-SP")
+
+print(f"{datetime.datetime.now()} Good morning! Robo-dan going to work!")
+
+while True:
+    T = temperature.get()
+    if T is not None and T > 1025:
+        break
+    time.sleep(60)
+    print(f"{datetime.datetime.now()} temperature at {T:.2f}, keep going!")
+
+print(f"{datetime.datetime.now()} temperature at {T}, Done!!")
+
+ramp_control.delta.put(0)
+print(f"{datetime.datetime.now()}  holding for 5 minutes")
+time.sleep(60 * 5)
+
+print(f"{datetime.datetime.now()} starting cooling")
+ramp_control.delta.put(-2.5)
+
+while True:
+    p = power_rbv.get()
+    print(f"{datetime.datetime.now()} power currently at {p}, still cooling")
+    if p < 1:
+        break
+    time.sleep(3 * 60)
+
+time.sleep(5 * 60)
+print(f"{datetime.datetime.now()} power low, declare done")
+ramp_control.done.put(1)
+
+time.sleep(5 * 60)
+print(f"{datetime.datetime.now()} putting power to 0 just in case")
+power_sp.put(0)