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Monthly merge April 2024#240

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slohse merged 35 commits intomainNationalGenomicsInfrastructure/miarka-provision:mainfrom monthlyNationalGenomicsInfrastructure/miarka-provision:monthlyCopy head branch name to clipboardMay 15, 2024

+340-57

Commits

Commits on Apr 15, 2024

• Update ngi_reports, taca, tac_ngi_pipeline to latest

  aanil

  committed
  96f9489

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Commits on Apr 18, 2024

• Merge pull request #235 from aanil/monthly

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  slohse

  authored
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Commits on Apr 22, 2024

• Update arteria_sequencing_report_service

  Aratz

  committed
  78d9a22

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• Set seqreport_service_version to v1.5.0-rc2

  Aratz

  committed
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• Put the singularity containers in biocontainers

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  Aratz

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• Fix demultiplex workflow path

  Aratz

  committed
  2dc5e7b

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• Include schema in deployment

  Aratz

  committed
  cb68ae2

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• Fix pipeline config files

  Aratz

  committed
  0ac7f61

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• Update sequencing-report-service to v1.5.0-rc3

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  Aratz

  and

  matrulda

  committed
  d312066

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• Fix pipeline config path

  Aratz

  committed
  b94606b

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• Update arteria sequencing-report-service to v1.5.0-rc4

  Aratz

  committed
  9537b34

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• Remove left-over comment

  Aratz

  committed
  4f2d976

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• Updated checkQC version

  nkongenelly

  committed
  973b7d7

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Commits on Apr 23, 2024

• Merge pull request #230 from Aratz/DEVELOP-2650_add_nf-core_demultiplex

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  Aratz

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  51ec205

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• Merge pull request #236 from nkongenelly/checkqc_update_version

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  Aratz

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Commits on Apr 24, 2024

• set up snpseq-metadata-service

  

  b97pla

  committed
  883c949

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• set up snpseq_metadata package

  

  b97pla

  committed
  d73bd57

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• fix task names

  

  b97pla

  committed
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Commits on Apr 25, 2024

• Remove leftover parameter from config

  Aratz

  committed
  09fe2c1

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• Update sequencing-report-service to 1.5.0

  Aratz

  committed
  ace0159

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• Merge pull request #238 from Aratz/DEVELOP-2650_add_nf-core_demultiplex

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  slohse

  authored
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Commits on Apr 26, 2024

• download xml schema and generate python models

  

  b97pla

  committed
  6d1a503

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• set environment

  

  b97pla

  committed
  9e885f0

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• use upcoming snpseq_metadata version

  

  b97pla

  committed
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Commits on Apr 29, 2024

• Merge pull request #237 from b97pla/deploy_snpseq_metadata_service

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  slohse

  authored
  51951ff

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• fix kong variable name

  

  b97pla

  committed
  4ba8a0c

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• Merge pull request #239 from b97pla/deploy_snpseq_metadata_service

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  slohse

  authored
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Commits on Apr 30, 2024

• include nf-core pipeline version tag in path

  

  b97pla

  committed
  e83b744

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• download configs with nf-core

  

  b97pla

  committed
  1a5225f

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• remove workflow directory level for nf-core commands

  

  b97pla

  committed
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Commits on May 2, 2024

• Merge pull request #241 from b97pla/monthly

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  slohse

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Commits on May 7, 2024

• Do not restart kong every hour

  matrulda

  committed
  76b8b68

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Commits on May 8, 2024

• specify full path to snpseq_metadata executable

  

  b97pla

  committed
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• Merge pull request #244 from b97pla/monthly

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  slohse

  authored
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Commits on May 13, 2024

• Merge pull request #243 from matrulda/DATAOPS-693_remove_hourly_kong_reboot

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  matrulda

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