Skip to content

Commit

Permalink
feat(visualizing): add video of vispy viewer
Browse files Browse the repository at this point in the history
  • Loading branch information
sanjayankur31 committed Nov 22, 2023
1 parent bb34581 commit 2fb1883
Show file tree
Hide file tree
Showing 3 changed files with 14 additions and 7 deletions.
21 changes: 14 additions & 7 deletions source/Userdocs/VisualisingCells.md
Original file line number Diff line number Diff line change
Expand Up @@ -21,13 +21,12 @@ This functionality is also exposed via the `pynml-plotmorph` command line tool.
Morphology of example cell plotted with `plot_2D` in the X-Y plane.
```

```{figure} ../images/pynml-plotmorph-1.png
:alt: Morphology of example cell visualised with `plot_interactive_3D`
:align: center
:width: 70%
Interactive visualisation of morphology of an example cell `plot_interactive_3D`.
```
<center>
<video src="../_static/files/20231122-HL23PYR.webm" width="70%" controls loop>
Your browser does not support the video tag
</video><br />
<i>Morphology of example cell visualised interactively using `plot_interactive_3D`</i>
</center>

These tools also allow plotting of networks.

Expand All @@ -39,6 +38,14 @@ These tools also allow plotting of networks.
Interactive visualisation of a network with `plot_interactive_3D`.
```

<center>
<video src="../_static/files/20231122-HL23-network.webm" width="70%" controls loop>
Your browser does not support the video tag
</video><br />
<i>Example network visualised interactively using `plot_interactive_3D`</i>
</center>


(userdocs:visualising_cells:morph:nmldb)=
### Visualising morphology of multi-compartmental cell models in NeuroML-db
The {ref}`NeuroML-DB <userdocs:finding_models:neuromldb>` platform shows detailed cell morphologies of all cells included in its database.
Expand Down
Binary file added source/_static/files/20231122-HL23-network.webm
Binary file not shown.
Binary file added source/_static/files/20231122-HL23PYR.webm
Binary file not shown.

0 comments on commit 2fb1883

Please sign in to comment.