chore: regen schemas

to ensure HindmarshRose1984 python usage is included
NeuroML · Oct 27, 2023 · b715089 · b715089
1 parent 39a8954
commit b715089
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Showing 11 changed files with 53 additions and 28 deletions.
diff --git a/scripts/schemas/generate-jupyter-ast.py b/scripts/schemas/generate-jupyter-ast.py
@@ -634,6 +634,7 @@ def main(srcdir, destdir):
 
 
 if __name__ == "__main__":
-    src = "/home/asinha/Documents/02_Code/00_mine/NeuroML/software/NeuroML2/"
+    # src = "/home/asinha/Documents/02_Code/00_mine/NeuroML/software/NeuroML2/"
+    src = None
     destdir = "../../source/Userdocs/Schemas/"
     main(src, destdir)
diff --git a/scripts/schemas/requirements.txt b/scripts/schemas/requirements.txt
@@ -0,0 +1,2 @@
+libneuroml
+pylems
diff --git a/source/Userdocs/Schemas/Cells.md b/source/Userdocs/Schemas/Cells.md
@@ -9,7 +9,7 @@
 
 Original ComponentType definitions: [Cells.xml](https://github.com/NeuroML/NeuroML2/blob/master/NeuroML2CoreTypes//Cells.xml).
 Schema against which NeuroML based on these should be valid: [NeuroML_v2.3.xsd](https://github.com/NeuroML/NeuroML2/tree/master/Schemas/NeuroML2/NeuroML_v2.3.xsd).
-Generated on 20/09/23 from [this](https://github.com/NeuroML/NeuroML2/commit/4039f943edeac10c2f173a9d2e7834a7a8b9ba8a) commit.
+Generated on 27/10/23 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit.
 Please file any issues or questions at the [issue tracker here](https://github.com/NeuroML/NeuroML2/issues).
 
 ---
@@ -3394,9 +3394,6 @@ variable = InitMembPotential(
 ```{code-block} xml
 <initMembPotential value="-65mV"/>
 ```
-```{code-block} xml
-<initMembPotential value="-65mV"/>
-```
 ````
 `````
 
@@ -3454,9 +3451,6 @@ variable = SpikeThresh(
 ```{code-block} xml
 <spikeThresh value="-20mV"/>
 ```
-```{code-block} xml
-<spikeThresh value="-20mV"/>
-```
 ````
 `````
 
@@ -7195,6 +7189,34 @@ extends *{ref}`schema:basecellmembpotcap`*
   </xs:complexContent>
 </xs:complexType>
 
+```
+````
+
+````{tab-item} Usage: Python
+*<a href="https://libneuroml.readthedocs.io/en/latest/search.html?q=HindmarshRose1984Cell" target="_blank">Go to the libNeuroML documentation</a>*
+```{code-block} python
+from neuroml import HindmarshRose1984Cell
+
+variable = HindmarshRose1984Cell(
+    id: 'a NmlId (required)' = None,
+    metaid: 'a MetaId (optional)' = None,
+    notes: 'a string (optional)' = None,
+    properties: 'list of Property(s) (optional)' = None,
+    annotation: 'a Annotation (optional)' = None,
+    neuro_lex_id: 'a NeuroLexId (optional)' = None,
+    C: 'a Nml2Quantity_capacitance (required)' = None,
+    a: 'a Nml2Quantity_none (required)' = None,
+    b: 'a Nml2Quantity_none (required)' = None,
+    c: 'a Nml2Quantity_none (required)' = None,
+    d: 'a Nml2Quantity_none (required)' = None,
+    s: 'a Nml2Quantity_none (required)' = None,
+    x1: 'a Nml2Quantity_none (required)' = None,
+    r: 'a Nml2Quantity_none (required)' = None,
+    x0: 'a Nml2Quantity_none (required)' = None,
+    y0: 'a Nml2Quantity_none (required)' = None,
+    z0: 'a Nml2Quantity_none (required)' = None,
+    v_scaling: 'a Nml2Quantity_voltage (required)' = None,
+)
 ```
 ````
 `````
diff --git a/source/Userdocs/Schemas/Channels.md b/source/Userdocs/Schemas/Channels.md
@@ -9,7 +9,7 @@
 
 Original ComponentType definitions: [Channels.xml](https://github.com/NeuroML/NeuroML2/blob/master/NeuroML2CoreTypes//Channels.xml).
 Schema against which NeuroML based on these should be valid: [NeuroML_v2.3.xsd](https://github.com/NeuroML/NeuroML2/tree/master/Schemas/NeuroML2/NeuroML_v2.3.xsd).
-Generated on 20/09/23 from [this](https://github.com/NeuroML/NeuroML2/commit/4039f943edeac10c2f173a9d2e7834a7a8b9ba8a) commit.
+Generated on 27/10/23 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit.
 Please file any issues or questions at the [issue tracker here](https://github.com/NeuroML/NeuroML2/issues).
 
 ---

diff --git a/source/Userdocs/Schemas/Inputs.md b/source/Userdocs/Schemas/Inputs.md
@@ -9,7 +9,7 @@
 
 Original ComponentType definitions: [Inputs.xml](https://github.com/NeuroML/NeuroML2/blob/master/NeuroML2CoreTypes//Inputs.xml).
 Schema against which NeuroML based on these should be valid: [NeuroML_v2.3.xsd](https://github.com/NeuroML/NeuroML2/tree/master/Schemas/NeuroML2/NeuroML_v2.3.xsd).
-Generated on 20/09/23 from [this](https://github.com/NeuroML/NeuroML2/commit/4039f943edeac10c2f173a9d2e7834a7a8b9ba8a) commit.
+Generated on 27/10/23 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit.
 Please file any issues or questions at the [issue tracker here](https://github.com/NeuroML/NeuroML2/issues).
 
 ---

diff --git a/source/Userdocs/Schemas/Networks.md b/source/Userdocs/Schemas/Networks.md
@@ -9,7 +9,7 @@
 
 Original ComponentType definitions: [Networks.xml](https://github.com/NeuroML/NeuroML2/blob/master/NeuroML2CoreTypes//Networks.xml).
 Schema against which NeuroML based on these should be valid: [NeuroML_v2.3.xsd](https://github.com/NeuroML/NeuroML2/tree/master/Schemas/NeuroML2/NeuroML_v2.3.xsd).
-Generated on 20/09/23 from [this](https://github.com/NeuroML/NeuroML2/commit/4039f943edeac10c2f173a9d2e7834a7a8b9ba8a) commit.
+Generated on 27/10/23 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit.
 Please file any issues or questions at the [issue tracker here](https://github.com/NeuroML/NeuroML2/issues).
 
 ---
@@ -755,10 +755,10 @@ from neuroml import Connection
 variable = Connection(
     id: 'a NonNegativeInteger (required)' = None,
     neuro_lex_id: 'a NeuroLexId (optional)' = None,
-    pre_cell_id: 'a string (required)' = None,
+    pre_cell_id: 'a Nml2PopulationReferencePath (required)' = None,
     pre_segment_id: 'a NonNegativeInteger (optional)' = '0',
     pre_fraction_along: 'a ZeroToOne (optional)' = '0.5',
-    post_cell_id: 'a string (required)' = None,
+    post_cell_id: 'a Nml2PopulationReferencePath (required)' = None,
     post_segment_id: 'a NonNegativeInteger (optional)' = '0',
     post_fraction_along: 'a ZeroToOne (optional)' = '0.5',
 )
@@ -848,9 +848,9 @@ from neuroml import SynapticConnection
 
 variable = SynapticConnection(
     neuro_lex_id: 'a NeuroLexId (optional)' = None,
-    from_: 'a string (required)' = None,
-    to: 'a string (required)' = None,
-    synapse: 'a string (required)' = None,
+    from_: 'a Nml2PopulationReferencePath (required)' = None,
+    to: 'a Nml2PopulationReferencePath (required)' = None,
+    synapse: 'a NmlId (required)' = None,
     destination: 'a NmlId (optional)' = None,
 )
 ```
@@ -970,10 +970,10 @@ from neuroml import ConnectionWD
 variable = ConnectionWD(
     id: 'a NonNegativeInteger (required)' = None,
     neuro_lex_id: 'a NeuroLexId (optional)' = None,
-    pre_cell_id: 'a string (required)' = None,
+    pre_cell_id: 'a Nml2PopulationReferencePath (required)' = None,
     pre_segment_id: 'a NonNegativeInteger (optional)' = '0',
     pre_fraction_along: 'a ZeroToOne (optional)' = '0.5',
-    post_cell_id: 'a string (required)' = None,
+    post_cell_id: 'a Nml2PopulationReferencePath (required)' = None,
     post_segment_id: 'a NonNegativeInteger (optional)' = '0',
     post_fraction_along: 'a ZeroToOne (optional)' = '0.5',
     weight: 'a float (required)' = None,
@@ -1691,9 +1691,9 @@ variable = ContinuousProjection(
 from neuroml import ExplicitInput
 
 variable = ExplicitInput(
-    target: 'a string (required)' = None,
-    input: 'a string (required)' = None,
-    destination: 'a string (optional)' = None,
+    target: 'a Nml2PopulationReferencePath (required)' = None,
+    input: 'a NmlId (required)' = None,
+    destination: 'a NmlId (optional)' = None,
 )
 ```
 ````
@@ -1860,7 +1860,7 @@ from neuroml import Input
 
 variable = Input(
     id: 'a NonNegativeInteger (required)' = None,
-    target: 'a string (required)' = None,
+    target: 'a Nml2PopulationReferencePath (required)' = None,
     destination: 'a NmlId (required)' = None,
     segment_id: 'a NonNegativeInteger (optional)' = None,
     fraction_along: 'a ZeroToOne (optional)' = None,
@@ -1947,7 +1947,7 @@ from neuroml import InputW
 
 variable = InputW(
     id: 'a NonNegativeInteger (required)' = None,
-    target: 'a string (required)' = None,
+    target: 'a Nml2PopulationReferencePath (required)' = None,
     destination: 'a NmlId (required)' = None,
     segment_id: 'a NonNegativeInteger (optional)' = None,
     fraction_along: 'a ZeroToOne (optional)' = None,

diff --git a/source/Userdocs/Schemas/NeuroMLCoreCompTypes.md b/source/Userdocs/Schemas/NeuroMLCoreCompTypes.md
@@ -7,7 +7,7 @@
 
 Original ComponentType definitions: [NeuroMLCoreCompTypes.xml](https://github.com/NeuroML/NeuroML2/blob/master/NeuroML2CoreTypes//NeuroMLCoreCompTypes.xml).
 Schema against which NeuroML based on these should be valid: [NeuroML_v2.3.xsd](https://github.com/NeuroML/NeuroML2/tree/master/Schemas/NeuroML2/NeuroML_v2.3.xsd).
-Generated on 20/09/23 from [this](https://github.com/NeuroML/NeuroML2/commit/4039f943edeac10c2f173a9d2e7834a7a8b9ba8a) commit.
+Generated on 27/10/23 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit.
 Please file any issues or questions at the [issue tracker here](https://github.com/NeuroML/NeuroML2/issues).
 
 ---

diff --git a/source/Userdocs/Schemas/NeuroMLCoreDimensions.md b/source/Userdocs/Schemas/NeuroMLCoreDimensions.md
@@ -7,7 +7,7 @@
 
 Original ComponentType definitions: [NeuroMLCoreDimensions.xml](https://github.com/NeuroML/NeuroML2/blob/master/NeuroML2CoreTypes//NeuroMLCoreDimensions.xml).
 Schema against which NeuroML based on these should be valid: [NeuroML_v2.3.xsd](https://github.com/NeuroML/NeuroML2/tree/master/Schemas/NeuroML2/NeuroML_v2.3.xsd).
-Generated on 20/09/23 from [this](https://github.com/NeuroML/NeuroML2/commit/4039f943edeac10c2f173a9d2e7834a7a8b9ba8a) commit.
+Generated on 27/10/23 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit.
 Please file any issues or questions at the [issue tracker here](https://github.com/NeuroML/NeuroML2/issues).
 
 ---

diff --git a/source/Userdocs/Schemas/PyNN.md b/source/Userdocs/Schemas/PyNN.md
@@ -9,7 +9,7 @@
 
 Original ComponentType definitions: [PyNN.xml](https://github.com/NeuroML/NeuroML2/blob/master/NeuroML2CoreTypes//PyNN.xml).
 Schema against which NeuroML based on these should be valid: [NeuroML_v2.3.xsd](https://github.com/NeuroML/NeuroML2/tree/master/Schemas/NeuroML2/NeuroML_v2.3.xsd).
-Generated on 20/09/23 from [this](https://github.com/NeuroML/NeuroML2/commit/4039f943edeac10c2f173a9d2e7834a7a8b9ba8a) commit.
+Generated on 27/10/23 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit.
 Please file any issues or questions at the [issue tracker here](https://github.com/NeuroML/NeuroML2/issues).
 
 ---

diff --git a/source/Userdocs/Schemas/Simulation.md b/source/Userdocs/Schemas/Simulation.md
@@ -9,7 +9,7 @@
 
 Original ComponentType definitions: [Simulation.xml](https://github.com/NeuroML/NeuroML2/blob/master/NeuroML2CoreTypes//Simulation.xml).
 Schema against which NeuroML based on these should be valid: [NeuroML_v2.3.xsd](https://github.com/NeuroML/NeuroML2/tree/master/Schemas/NeuroML2/NeuroML_v2.3.xsd).
-Generated on 20/09/23 from [this](https://github.com/NeuroML/NeuroML2/commit/4039f943edeac10c2f173a9d2e7834a7a8b9ba8a) commit.
+Generated on 27/10/23 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit.
 Please file any issues or questions at the [issue tracker here](https://github.com/NeuroML/NeuroML2/issues).
 
 ---

diff --git a/source/Userdocs/Schemas/Synapses.md b/source/Userdocs/Schemas/Synapses.md
@@ -9,7 +9,7 @@
 
 Original ComponentType definitions: [Synapses.xml](https://github.com/NeuroML/NeuroML2/blob/master/NeuroML2CoreTypes//Synapses.xml).
 Schema against which NeuroML based on these should be valid: [NeuroML_v2.3.xsd](https://github.com/NeuroML/NeuroML2/tree/master/Schemas/NeuroML2/NeuroML_v2.3.xsd).
-Generated on 20/09/23 from [this](https://github.com/NeuroML/NeuroML2/commit/4039f943edeac10c2f173a9d2e7834a7a8b9ba8a) commit.
+Generated on 27/10/23 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit.
 Please file any issues or questions at the [issue tracker here](https://github.com/NeuroML/NeuroML2/issues).
 
 ---