Update branch name references from master to main (#664)

* Update branch name references from master to main

* Change branch name from master to main in md and workflow files

* Fix typo

+tests/+unit/nwbExportTest.m

@@ -65,7 +65,7 @@ function testExportNwbFileWithMissingRequiredLink(testCase)
             testCase.verifyError(@(f, fn) nwbExport(testCase.NwbObject, nwbFilePath), ...
                 'NWB:RequiredPropertyMissing')
 
-            % Clean up: the NwbObject is re-used by other tests.
+            % Clean up: the NwbObject is reused by other tests.
             testCase.NwbObject.general_intracellular_ephys.remove('Electrode');
         end
 

.github/ISSUE_TEMPLATE/bug_report.yml

@@ -56,9 +56,9 @@ body:
     id: terms
     attributes:
       label: Code of Conduct
-      description: By submitting this issue, you agree to follow our [Code of Conduct](https://github.com/neurodatawithoutborders/matnwb/blob/master/.github/CODE_OF_CONDUCT.md)
+      description: By submitting this issue, you agree to follow our [Code of Conduct](https://github.com/neurodatawithoutborders/matnwb/blob/main/.github/CODE_OF_CONDUCT.md)
       options:
-        - label: I agree to follow this project's [Code of Conduct](https://github.com/neurodatawithoutborders/matnwb/blob/master/.github/CODE_OF_CONDUCT.md)
+        - label: I agree to follow this project's [Code of Conduct](https://github.com/neurodatawithoutborders/matnwb/blob/main/.github/CODE_OF_CONDUCT.md)
           required: true
         - label: Have you ensured this bug was not already [reported](https://github.com/NeurodataWithoutBorders/matnwb/issues)?
           required: true

.github/ISSUE_TEMPLATE/documentation.yml

@@ -36,9 +36,9 @@ body:
     id: terms
     attributes:
       label: Code of Conduct
-      description: By submitting this issue, you agree to follow our [Code of Conduct](https://github.com/neurodatawithoutborders/matnwb/blob/master/.github/CODE_OF_CONDUCT.md)
+      description: By submitting this issue, you agree to follow our [Code of Conduct](https://github.com/neurodatawithoutborders/matnwb/blob/main/.github/CODE_OF_CONDUCT.md)
       options:
-        - label: I agree to follow this project's [Code of Conduct](https://github.com/neurodatawithoutborders/matnwb/blob/master/.github/CODE_OF_CONDUCT.md)
+        - label: I agree to follow this project's [Code of Conduct](https://github.com/neurodatawithoutborders/matnwb/blob/main/.github/CODE_OF_CONDUCT.md)
           required: true
         - label: Have you ensured this change was not already [requested](https://github.com/NeurodataWithoutBorders/matnwb/issues)?
           required: true

.github/ISSUE_TEMPLATE/feature_request.yml

@@ -54,9 +54,9 @@ body:
     id: terms
     attributes:
       label: Code of Conduct
-      description: By submitting this issue, you agree to follow our [Code of Conduct](https://github.com/neurodatawithoutborders/matnwb/blob/master/.github/CODE_OF_CONDUCT.md)
+      description: By submitting this issue, you agree to follow our [Code of Conduct](https://github.com/neurodatawithoutborders/matnwb/blob/main/.github/CODE_OF_CONDUCT.md)
       options:
-        - label: I agree to follow this project's [Code of Conduct](https://github.com/neurodatawithoutborders/matnwb/blob/master/.github/CODE_OF_CONDUCT.md)
+        - label: I agree to follow this project's [Code of Conduct](https://github.com/neurodatawithoutborders/matnwb/blob/main/.github/CODE_OF_CONDUCT.md)
           required: true
         - label: Have you ensured this change was not already [requested](https://github.com/NeurodataWithoutBorders/matnwb/issues)?
           required: true

.github/workflows/run_codespell.yml

@@ -10,10 +10,10 @@ name: Codespell
 on:
   pull_request:
     branches:
-      - master
+      - main
   push:
     branches:
-      - master
+      - main
 
 jobs:
   codespell:

.github/workflows/run_tests.yml

@@ -4,14 +4,14 @@ name: Run tests
 on:
   pull_request:
     branches:
-      - master
+      - main
     paths-ignore:
       - "*.md"
       - "*.codespellrc"
       - ".github/**"
   push:
     branches:
-      - master
+      - main
 
 jobs:
   run_tests:

README.md

@@ -12,14 +12,14 @@
   <a href="https://matlab.mathworks.com/open/github/v1?repo=NeurodataWithoutBorders/matnwb&file=tutorials/basicUsage.mlx">
     <img src="https://www.mathworks.com/images/responsive/global/open-in-matlab-online.svg" alt="MATLAB Online">
   </a>
-  <a href="https://codecov.io/gh/NeurodataWithoutBorders/matnwb">
-    <img src="https://codecov.io/gh/NeurodataWithoutBorders/matnwb/branch/master/graph/badge.svg?token=apA7F24NsO" alt="Codecov">
+  <a href="https://codecov.io/gh/NeurodataWithoutBorders/matnwb" >  
+    <img src="https://codecov.io/gh/NeurodataWithoutBorders/matnwb/graph/badge.svg?token=apA7F24NsO" alt="Codecov"/>    
   </a>
-   <a href="https://github.com/NeurodataWithoutBorders/matnwb/actions/workflows/run_tests.yml?query=event%3Apush+branch%3Amaster">
-   <img src="https://github.com/NeurodataWithoutBorders/matnwb/actions/workflows/run_tests.yml/badge.svg?branch=master" alt="Run tests">
+   <a href="https://github.com/NeurodataWithoutBorders/matnwb/actions/workflows/run_tests.yml?query=event%3Apush+branch%3Amain">
+   <img src="https://github.com/NeurodataWithoutBorders/matnwb/actions/workflows/run_tests.yml/badge.svg?branch=main" alt="Run tests">
   </a>
-   <a href="https://github.com/NeurodataWithoutBorders/matnwb/actions/workflows/run_codespell.yml?query=event%3Apush+branch%3Amaster">
-   <img src="https://github.com/NeurodataWithoutBorders/matnwb/actions/workflows/run_codespell.yml/badge.svg?branch=master" alt="Codespell">
+   <a href="https://github.com/NeurodataWithoutBorders/matnwb/actions/workflows/run_codespell.yml?query=event%3Apush+branch%3Amain">
+   <img src="https://github.com/NeurodataWithoutBorders/matnwb/actions/workflows/run_codespell.yml/badge.svg?branch=main" alt="Codespell">
   </a>
 </h4>
 
@@ -57,7 +57,7 @@ nwbFile = nwbRead('/path/to/file.nwb');
 The returned NwbFile object provides an in-memory view of the underlying NWB data. For more information, see the [MatNWB Documentation](https://matnwb.readthedocs.io/en/latest/pages/getting_started/file_read.html#reading-with-matnwb)
 
 ### Writing an NWB File
-The building blocks of an NWB file are the neurodata types defined in the [NWB Format Specification](https://nwb-schema.readthedocs.io/en/latest/). In MatNWB, these types are autogenerated from the schema specifications and located as classes in the [`+types`](https://github.com/NeurodataWithoutBorders/matnwb/tree/master/%2Btypes) [namespace](https://www.mathworks.com/help/matlab/matlab_oop/scoping-classes-with-packages.html) of the MatNWB root directory. 
+The building blocks of an NWB file are the neurodata types defined in the [NWB Format Specification](https://nwb-schema.readthedocs.io/en/latest/). In MatNWB, these types are autogenerated from the schema specifications and located as classes in the [`+types`](https://github.com/NeurodataWithoutBorders/matnwb/tree/main/%2Btypes) [namespace](https://www.mathworks.com/help/matlab/matlab_oop/scoping-classes-with-packages.html) of the MatNWB root directory. 
 
 To create an NWB file, you can create neurodata objects, add them to an NwbFile object and write to disk using the `nwbExport` function (detailed examples are provided in the tutorials):
 ```matlab
@@ -78,7 +78,7 @@ The `generateCore` command can generate classes for older versions of the nwb sc
 generateCore('2.1.0'); % generates classes for NWB schema version 2.1.0
 ```
 
-Supported schema versions are provided in the MatNWB root directory under [`nwb-schema`](https://github.com/NeurodataWithoutBorders/matnwb/tree/master/nwb-schema).
+Supported schema versions are provided in the MatNWB root directory under [`nwb-schema`](https://github.com/NeurodataWithoutBorders/matnwb/tree/main/nwb-schema).
 
 
 ## Tutorials
@@ -137,7 +137,7 @@ The NWB schema has regular updates and is open to addition of new types along wi
 For those planning on using MatNWB alongside PyNWB, please keep the following in mind:
  - MatNWB is dependent on the schema, which may not necessarily correspond with your PyNWB schema version. Please consider overwriting the contents within MatNWB's **~/schema/core** directory with the generating PyNWB's **src/pynwb/data directory** and running `generateCore` to ensure compatibility between systems.
 
-The `master` branch of this repository is considered perpetually unstable. If you want to stay on the safer side, please consider downloading the more stable releases from the [Releases](https://github.com/NeurodataWithoutBorders/matnwb/releases) page. Most releases will coincide with nwb-schema releases and guarantee compatibility of new features introduced with the schema release along with backwards compatibility with all previous nwb-schema releases.
+The `main` branch of this repository is considered perpetually unstable. If you want to stay on the safer side, please consider downloading the more stable releases from the [Releases](https://github.com/NeurodataWithoutBorders/matnwb/releases) page. Most releases will coincide with nwb-schema releases and guarantee compatibility of new features introduced with the schema release along with backwards compatibility with all previous nwb-schema releases.
 
 This package reads and writes NWB 2.0 files and does not support older formats.
 

docs/source/conf.py

@@ -59,7 +59,7 @@ def setup(app):
 
 def linkcode_resolve(domain, info):
     filename = info['module'].replace('.', '/')
-    source_url = 'https://github.com/NeurodataWithoutBorders/matnwb/blob/master/'+filename+'/'+info['fullname']+'.m'
+    source_url = 'https://github.com/NeurodataWithoutBorders/matnwb/blob/main/'+filename+'/'+info['fullname']+'.m'
     print(source_url)
     return source_url