Remove references to region references/builders for HDMF 4.0 (#1991) #1717
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Run code coverage | |
| on: | |
| push: | |
| branches: | |
| - dev | |
| tags-ignore: # exclude tags created by "ci_addons publish_github_release" | |
| - 'latest' | |
| - 'latest-tmp' | |
| pull_request: | |
| workflow_dispatch: | |
| jobs: | |
| run-coverage: | |
| name: ${{ matrix.os }}, opt reqs ${{ matrix.opt_req }} | |
| runs-on: ${{ matrix.os }} | |
| # TODO handle forks | |
| # run pipeline on either a push event or a PR event on a fork | |
| # if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.event.pull_request.base.repo.full_name | |
| defaults: | |
| run: | |
| shell: bash | |
| strategy: | |
| matrix: | |
| include: | |
| - { os: ubuntu-latest , opt_req: true } | |
| - { os: ubuntu-latest , opt_req: false } | |
| - { os: windows-latest, opt_req: false } | |
| - { os: macos-latest , opt_req: false } | |
| env: | |
| OS: ${{ matrix.os }} | |
| PYTHON: '3.12' | |
| steps: | |
| - name: Cancel non-latest runs | |
| uses: styfle/[email protected] | |
| with: | |
| all_but_latest: true | |
| access_token: ${{ github.token }} | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: 'recursive' | |
| fetch-depth: 0 # tags are required for versioneer to determine the version | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.PYTHON }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install -r requirements-dev.txt -r requirements.txt | |
| - name: Install optional dependencies | |
| if: ${{ matrix.opt_req }} | |
| run: python -m pip install -r requirements-opt.txt | |
| - name: Install package | |
| run: | | |
| python -m pip install . | |
| python -m pip list | |
| - name: Run unit tests and generate coverage report | |
| run: | | |
| python -m coverage run test.py --pynwb | |
| python -m coverage xml # codecov uploader requires xml format | |
| python -m coverage report | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| flags: unit | |
| file: coverage.xml | |
| fail_ci_if_error: true | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Run integration tests and generate coverage report | |
| run: | | |
| python -m coverage run -p test.py --integration --validation-module --backwards | |
| # validation CLI tests generate separate .coverage files that need to be merged | |
| python -m coverage combine | |
| python -m coverage xml # codecov uploader requires xml format | |
| python -m coverage report | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| flags: integration | |
| file: coverage.xml | |
| fail_ci_if_error: true | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |