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DEV: Added basic img_proc functions to modules.yaml for mrg #40

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DEV: Added basic img_proc functions to modules.yaml for mrg #40

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6de5786
DEV: Added basic functions to modules.yaml for mrg
Dec 10, 2014
1adec48
DEV: Added read_amiraMesh and read_netCDF to modules.yaml
Dec 10, 2014
e918077
DEV: Updated modules.yaml to match import functions specified by API
Jan 6, 2015
6f6935b
DEV: Restructured image processing tool inclusion in the API
Jan 20, 2015
1062d05
DEV: Added vtk_tools module to package index for autowrapping
Feb 25, 2015
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11 changes: 11 additions & 0 deletions vt_config/NSLS-II/init.py
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Original file line number Diff line number Diff line change
Expand Up @@ -106,8 +106,19 @@ def get_modules():
'skxray.core',
'skxray.recip',
'skxray.io.binary',
'skxray.io.avizo_io',
'skxray.io.net_cdf_io',
'skxray.io.tiff_io',
'skxray.io.vtk_tools',
'skxray.api.diffraction',
'vttools.to_wrap.fitting',
'skxray.api.image_processing.arithmetic.basic_math',
'skxray.api.image_processing.arithmetic.logic',
'skxray.api.image_processing.filtering',
'skxray.api.image_processing.histogram',
'skxray.api.image_processing.morphology',
'skxray.api.image_processing.thresholding',
'skxray.api.image_processing.transformation'
]

for mod_name in mod_targets:
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168 changes: 165 additions & 3 deletions vttools/vtmods/import_lists/modules.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -18,6 +18,23 @@ import_modules:

# list of functions to autowrap
autowrap_func:
# FILE I/O
- func_name: read_binary
module_path: skxray.io.binary
namespace: io
- func_name: read_amiraMesh
module_path: skxray.io.avizo_io
namespace: io
- func_name: read_netCDF
module_path: skxray.io.net_cdf_io
namespace: io
- func_name: read_tiff
module_path: skxray.io.tiff_io
namespace: io
- func_name: save_tiff
module_path: skxray.io.tiff_io
namespace: io

- func_name: grid3d
module_path: skxray.core
namespace: core
Expand Down Expand Up @@ -49,9 +66,6 @@ autowrap_func:
- func_name : pixel_to_phi
module_path: skxray.core
namespace: core
- func_name: read_binary
module_path: skxray.io.binary
namespace: io
- func_name: convolve
module_path: numpy
namespace: numpy
Expand All @@ -74,6 +88,154 @@ autowrap_func:
- func_name: estimate_d_blind
module_path: skxray.calibration
namespace: calibration
#- func_name: find_ring_center_acorr_iD
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Can you delete these? I don't think they are used anywhere.

# module_path: skxray.image
# namespace: image
# FF IMAGE PROCESSING: FILTER TOOLS
- func_name: gaussian_filter
module_path: skxray.api.ff_image
namespace: image_processing | filtering
- func_name: median_filter
module_path: skxray.api.ff_image
namespace: image_processing | filtering
- func_name: minimum_filter
module_path: skxray.api.ff_image
namespace: image_processing | filtering
- func_name: maximum_filter
module_path: skxray.api.ff_image
namespace: image_processing | filtering
- func_name: gaussian_gradient_magnitude
module_path: skxray.api.ff_image
namespace: image_processing | filtering
- func_name: gaussian_laplace
module_path: skxray.api.ff_image
namespace: image_processing | filtering
- func_name: laplace
module_path: skxray.api.ff_image
namespace: image_processing | filtering
- func_name: percentile_filter
module_path: skxray.api.ff_image
namespace: image_processing | filtering
- func_name: sobel
module_path: skxray.api.ff_image
namespace: image_processing | filtering
- func_name: prewitt
module_path: skxray.api.ff_image
namespace: image_processing | filtering
- func_name: rank_filter
module_path: skxray.api.ff_image
namespace: image_processing | filtering
# FF IMAGE PROCESSING: HISTOGRAM TOOLS
- func_name: hist_make
module_path: skxray.api.ff_image
namespace: image_processing | histogram
- func_name: rescale_intensity_values
module_path: skxray.api.ff_image
namespace: image_processing | histogram
# FF IMAGE PROCESSING: MORPHOLOGY MANIPULATION
- func_name: binary_opening
module_path: skxray.api.ff_image
namespace: image_processing | morphology | binary
- func_name: binary_closing
module_path: skxray.api.ff_image
namespace: image_processing | morphology | binary
- func_name: binary_erosion
module_path: skxray.api.ff_image
namespace: image_processing | morphology | binary
- func_name: binary_dilation
module_path: skxray.api.ff_image
namespace: image_processing | morphology | binary
- func_name: grey_opening
module_path: skxray.api.ff_image
namespace: image_processing | morphology | grayscale
- func_name: grey_closing
module_path: skxray.api.ff_image
namespace: image_processing | morphology | grayscale
- func_name: grey_erosion
module_path: skxray.api.ff_image
namespace: image_processing | morphology | grayscale
- func_name: grey_dilation
module_path: skxray.api.ff_image
namespace: image_processing | morphology | grayscale
- func_name: binary_fill_holes
module_path: skxray.api.ff_image
namespace: image_processing | morphology | binary
- func_name: binary_propagation
module_path: skxray.api.ff_image
namespace: image_processing | morphology | binary
- func_name: extract_material
module_path: skxray.api.ff_image
namespace: image_processing | morphology | material manipulation
- func_name: extract_all_else
module_path: skxray.api.ff_image
namespace: image_processing | morphology | material manipulation
# FF IMAGE PROCESSING: THRESHOLDING TOOLS
- func_name: thresh_globalGT
module_path: skxray.api.ff_image
namespace: image_processing | thresholding
- func_name: thresh_globalLT
module_path: skxray.api.ff_image
namespace: image_processing | thresholding
- func_name: thresh_bounded
module_path: skxray.api.ff_image
namespace: image_processing | thresholding
- func_name: thresh_adapt
module_path: skxray.api.ff_image
namespace: image_processing | thresholding
- func_name: thresh_otsu
module_path: skxray.api.ff_image
namespace: image_processing | thresholding
- func_name: thresh_yen
module_path: skxray.api.ff_image
namespace: image_processing | thresholding
- func_name: thresh_isodata
module_path: skxray.api.ff_image
namespace: image_processing | thresholding
# FF IMAGE PROCESSING: TRANSFORMATION TOOLS
- func_name: swap_axes
module_path: skxray.api.ff_image
namespace: image_processing | transform
- func_name: flip_axis
module_path: skxray.api.ff_image
namespace: image_processing | transform
- func_name: crop_volume
module_path: skxray.api.ff_image
namespace: image_processing | transform
- func_name: rotate_volume
module_path: skxray.api.ff_image
namespace: image_processing | transform
# FF IMAGE PROCESSING: LOGICAL OPERATIONS
- func_name: logical_and
module_path: skxray.api.ff_image
namespace: image_processing | math | logic
- func_name: logical_or
module_path: skxray.api.ff_image
namespace: image_processing | math | logic
- func_name: logical_not
module_path: skxray.api.ff_image
namespace: image_processing | math | logic
- func_name: logical_xor
module_path: skxray.api.ff_image
namespace: image_processing | math | logic
- func_name: logical_nand
module_path: skxray.api.ff_image
namespace: image_processing | math | logic
- func_name: logical_subtract
module_path: skxray.api.ff_image
namespace: image_processing | math | logic
# FF IMAGE PROCESSING: ARITHMETIC OPERATIONS
- func_name: add
module_path: skxray.api.ff_image
namespace: image_processing | math | arithmetic
- func_name: subtract
module_path: skxray.api.ff_image
namespace: image_processing | math | arithmetic
- func_name: multiply
module_path: skxray.api.ff_image
namespace: image_processing | math | arithmetic
- func_name: divide
module_path: skxray.api.ff_image
namespace: image_processing | math | arithmetic


#- {func_name: emission_line_search, module_path: skxray.constants, namespace: core, add_input_dict: true}
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