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Update synonyms-obo.md
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nicolevasilevsky authored Apr 23, 2024
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Expand Up @@ -54,6 +54,12 @@ Synonyms can also be classified by types. The default is no type. The synonym ty
Additional standardized synonym types can be found in the [OBO Metadata Ontology](https://obofoundry.org/ontology/omo)
as sub-properties of [oboInOwl:SynonymType](https://www.ebi.ac.uk/ols4/ontologies/omo/properties/http%253A%252F%252Fwww.geneontology.org%252Fformats%252FoboInOwl%2523SynonymTypeProperty).

#### Additional (interesting) Synonym Type Examples from Mondo

- 'A synonym that is historic and discouraged' (DEPRECATED)
- 'Synonym to be removed from public release but maintained in edit version as record of external usage' (EXCLUDE)
- ClinGen label (CLINGEN_LABEL)

### Database cross references

Whenever possible, database cross-references (dbxrefs) for synonyms should be provided, to indicate the publication that used the synonym. References to PubMed IDs should be in the format PMID:XXXXXXX (no space). However, dbxrefs for synonyms are not mandatory in most ontologies.

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