Skip to content

Commit

Permalink
Update synonyms-obo.md
Browse files Browse the repository at this point in the history
  • Loading branch information
nicolevasilevsky authored Apr 23, 2024
1 parent 437d295 commit 50cf88e
Showing 1 changed file with 5 additions and 3 deletions.
8 changes: 5 additions & 3 deletions docs/reference/synonyms-obo.md
Original file line number Diff line number Diff line change
Expand Up @@ -58,9 +58,11 @@ as sub-properties of [oboInOwl:SynonymType](https://www.ebi.ac.uk/ols4/ontologie

#### Additional (interesting) Synonym Type Examples from Mondo

- 'A synonym that is historic and discouraged' (DEPRECATED)
- 'Synonym to be removed from public release but maintained in edit version as record of external usage' (EXCLUDE)
- ClinGen label (CLINGEN_LABEL)
Synonym type | Description | Example
-- | -- | -- |
'A synonym that is historic and discouraged' (DEPRECATED) | Mondo marks synonyms with DEPRECATED that are historic and no longer appropriate to use, e.g. all occurrences of “mental retardation” should be “intellectual disability”. They try to avoid including things in this list: https://en.wikipedia.org/wiki/List_of_medical_eponyms_with_Nazi_associations but if it’s established (e.g. Wegener granulomatosis), it may be included as a synonym and mark DEPRECATED | MONDO:0007113 Angelman syndrome, synonym: happy puppet syndrome
'Synonym to be removed from public release but maintained in edit version as record of external usage' (EXCLUDE) | Some synonyms are annotated with EXCLUDE, e.g. “NOS” (not otherwise specified) synonyms. It is useful to have these in the edit version, but these are filtered on release. | MONDO:0007667 subependymoma, synonym: subependymal astrocytoma NOS
ClinGen label (CLINGEN_LABEL) | Added to gene-based names/synonyms (or other labels) that were requested by an external user, ClinGen, and other terms that are the preferred terms for ClinGen.| MONDO:0010015 anterior segment dysgenesis 7, synonym: PXDN-related ocular dysgenesis

### Database cross references

Expand Down

0 comments on commit 50cf88e

Please sign in to comment.