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@OHDSI

Observational Health Data Sciences and Informatics

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  1. CommonDataModel CommonDataModel Public

    Definition and DDLs for the OMOP Common Data Model (CDM)

    HTML 907 458

  2. Vocabulary-v5.0 Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    PLpgSQL 225 75

  3. Atlas Atlas Public

    ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 275 139

  4. Cyclops Cyclops Public

    Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 39 33

  5. CohortMethod CohortMethod Public

    An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

    R 82 58

  6. PatientLevelPrediction PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    HTML 189 90

Repositories

Showing 10 of 318 repositories
  • Arachne Public

    Arachne Data Node web application

    OHDSI/Arachne’s past year of commit activity
    TypeScript 1 Apache-2.0 1 11 0 Updated Jan 11, 2025
  • context Public

    A python library to create knowledge graphs for context-aware prediction modeling and more.

    OHDSI/context’s past year of commit activity
    Python 0 0 1 0 Updated Jan 11, 2025
  • Characterization Public

    Various types of characterizations of a target and outcome cohort.

    OHDSI/Characterization’s past year of commit activity
    R 3 5 5 4 Updated Jan 10, 2025
  • ClinicalCharacteristics Public

    [under development] table shell approach to OMOP characterization

    OHDSI/ClinicalCharacteristics’s past year of commit activity
    R 0 Apache-2.0 1 11 0 Updated Jan 10, 2025
  • ProtocolGenerator Public

    Converts a Strategus JSON specification into a human readable html document

    OHDSI/ProtocolGenerator’s past year of commit activity
    R 0 0 2 0 Updated Jan 10, 2025
  • CohortDiagnostics Public

    An R package for performing various cohort diagnostics.

    OHDSI/CohortDiagnostics’s past year of commit activity
    R 42 50 31 (1 issue needs help) 2 Updated Jan 10, 2025
  • AresIndexer Public

    R package that creates the index and relevant files for an Ares deployment.

    OHDSI/AresIndexer’s past year of commit activity
    R 1 Apache-2.0 5 17 1 Updated Jan 10, 2025
  • OhdsiReportGenerator Public

    Code to extract data from the OHDSI results structure and generate plots, presentations and reports

    OHDSI/OhdsiReportGenerator’s past year of commit activity
    R 0 0 0 0 Updated Jan 10, 2025
  • circe-be Public

    CIRCE is a cohort definition and syntax compiler tool for OMOP CDMv5

    OHDSI/circe-be’s past year of commit activity
    Java 9 Apache-2.0 13 7 7 Updated Jan 10, 2025
  • PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    OHDSI/PatientLevelPrediction’s past year of commit activity
    HTML 189 90 37 (2 issues need help) 3 Updated Jan 10, 2025
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