fix: formatting

OpenOmics · Feb 7, 2024 · ad0258a · ad0258a
1 parent 7166ad1
commit ad0258a
Showing 1 changed file with 7 additions and 6 deletions.
diff --git a/workflow/demux.smk b/workflow/demux.smk
@@ -91,8 +91,9 @@ rule bclconvert:
         top_unknown            = expand("{out_to}/demux/Reports/Top_Unknown_Barcodes.csv", **demux_expand_args if config['bclconvert'] else demux_noop_args),
         breadcrumb             = expand("{out_to}/demux/.BC_DEMUX_COMPLETE", **demux_expand_args if config['bclconvert'] else demux_noop_args),
     container: config["resources"]["sif"] + "weave_bclconvert_0.0.3.sif",
-    threads: 38
-    resources: mem_mb = int(64e3)
+    threads: 50
+    resources: 
+        mem_mb = int(64e3),
     shell:
         """
         bcl-convert \
@@ -102,10 +103,10 @@ rule bclconvert:
         --sample-sheet {input.samplesheet} \
         --fastq-gzip-compression-level 9 \
         --bcl-sampleproject-subdirectories true \
-        --bcl-num-conversion-threads 8 \
-        --bcl-num-compression-threads 2 \
-        --bcl-num-decompression-threads 2 \
-        --bcl-num-parallel-tiles 3 \
+        --bcl-num-conversion-threads 10 \
+        --bcl-num-compression-threads 10 \
+        --bcl-num-decompression-threads 4 \
+        --bcl-num-parallel-tiles 2 \
         --no-lane-splitting true
         touch {output.breadcrumb}
         """