Merge branch 'master' of github.com:OpenSourceBrain/BlueBrainProjectS…

…howcase

* 'master' of github.com:OpenSourceBrain/BlueBrainProjectShowcase:
  Update README.md

NMC/README.md

@@ -3,32 +3,36 @@
 This directory contains code for converting cell models from the [Neocortical Microcircuit Collaboration Portal](https://bbp.epfl.ch/nmc-portal/microcircuit)
 to NeuroML 2.
 
-#### [Parser](parser)
+#### Parser
 
-This directory contains a number of examples of cell models in NEURON format downloaded as zip files from the NMC site, e.g. 
+[This directory](parser) contains a number of examples of cell models in NEURON format downloaded as zip files from the NMC site, e.g. 
 [L23_PC_cADpyr229_1](parser/L23_PC_cADpyr229_1). It also contains scripts in python for [parsing these](parser/ParseAll.py) 
 and generating the corresponding cell models in NeuroML2.
 
 
-#### [NeuroML 2 cell models](NeuroML2)
+#### NeuroML 2 cell models
 
-This directory contains a number of cell models exported in NeuroML 2 format, e.g. 
+[This directory](NeuroML2) contains a number of cell models exported in NeuroML 2 format, e.g. 
 [cADpyr229_L23_PC_5ecbf9b163_0_0.cell.nml](https://github.com/OpenSourceBrain/BlueBrainProjectShowcase/blob/master/NMC/NeuroML2/cADpyr229_L23_PC_5ecbf9b163_0_0.cell.nml).
 
 See [here](https://github.com/OpenSourceBrain/BlueBrainProjectShowcase/blob/master/NMC/NeuroML2/README.md) for more.
 
 
-#### [NEURON code](NEURON)
+#### NEURON code
 
-This directory contains a number of the original NEURON files (e.g. the NMODL files) used for the BBP models. This directory 
+[This directory](NEURON) contains a number of the original NEURON files (e.g. the NMODL files) used for the BBP models. This directory 
 is mainly used for testing the models and comparing the NeuroML2 versions to the original NEURON models.
 
 
 #### OSB 3D Explorer
 
 Cells and networks in valid NeuroML 2 can be visualised and analysed in the Open Source Brain 3D explorer. See 
-[here](http://opensourcebrain.org/projects/blue-brain-project-showcase/repository/revisions/master/show/NMC/NeuroML2?explorer=https%3A%2F%2Fraw.githubusercontent.com%2FOpenSourceBrain%2FBlueBrainProjectShowcase%2Fmaster%2FNMC%2FNeuroML2%2FcADpyr232_L5_TTPC1_0fb1ca4724_0_0.cell.nml) for an example:
+[here](http://opensourcebrain.org/projects/blue-brain-project-showcase/models?explorer=https%253A%252F%252Fraw.githubusercontent.com%252FOpenSourceBrain%252FBlueBrainProjectShowcase%252Fmaster%252FNMC%252FNeuroML2%252FcADpyr232_L5_TTPC1_0fb1ca4724.stepcurrent3.net.nml) for an example:
 
 
 ![OSB](https://raw.githubusercontent.com/OpenSourceBrain/BlueBrainProjectShowcase/master/NMC/NeuroML2/images/OSB.jpg)
 
+#### Connectome
+
+Work has started converting the connectome of the microcircuit to NeuroML, see [here](Connectome).
+