Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

PR for reporting simulation results for Hindmarsh Rose 1984 #3

Open
wants to merge 5 commits into
base: master
Choose a base branch
from
Open
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
47 changes: 47 additions & 0 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -16,6 +16,53 @@ model to fire bursts.
The dynamical variables x,y,z correspond to the membrane potential, a
recovery variable, and a slower adaptation current, respectively.

# Simulation results

## For Regular Bursting

1) Membrane Potential (x)

![alt text](https://github.com/doorkn-b/HindmarshRose1984/blob/master/Sim%20Images/xreg.png)

2) Recovery Variable (y)

![alt text](https://github.com/doorkn-b/HindmarshRose1984/blob/master/Sim%20Images/yreg.png)

3) Slower Adaptation Current (z)

![alt text](https://github.com/doorkn-b/HindmarshRose1984/blob/master/Sim%20Images/zreg.png)


## For Chaotic Bursting

1) Membrane Potential (x)

![alt text](https://github.com/doorkn-b/HindmarshRose1984/blob/master/Sim%20Images/xch.png)

2) Recovery Variable (y)

![alt text](https://github.com/doorkn-b/HindmarshRose1984/blob/master/Sim%20Images/ych.png)

3) Slower Adaptation Current (z)

![alt text](https://github.com/doorkn-b/HindmarshRose1984/blob/master/Sim%20Images/zch.png)

Simulations conducted through [jNeuroML](https://github.com/NeuroML/jNeuroML).

Adding the environment variable JNML_HOME, pointing to the jNeuroML folder, as well as adding this path to the PATH variable will let you use the jnml utility from any folder.

or

```
./jnml LEMS_Regular_HindmarshRose.xml
./jnml LEMS_Chaotic_HindmarshRose.xml
```
from within the file.

Simulated by https://github.com/doorkn-b



This model firstly appeared in:
Hindmarsh J. L., and Rose R. M. (1984) A model of neuronal bursting
using three coupled first order differential equations. Proc. R. Soc.
Expand Down
Binary file added Sim Images/xch.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added Sim Images/xreg.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added Sim Images/ych.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added Sim Images/yreg.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added Sim Images/zch.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added Sim Images/zreg.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.