Install HDF5 for pytables on macos-latest #20
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| name: Continuous build using OMV | |
| on: | |
| push: | |
| branches: [ master, development, experimental ] | |
| pull_request: | |
| branches: [ master, development, experimental ] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.runs-on }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [ 3.9 ] | |
| runs-on: [ ubuntu-latest, macos-latest ] | |
| engine: [ jNeuroML, jNeuroML_NEURON, jNeuroML_NetPyNE, jNeuroML_EDEN, jNeuroML_validate, jNeuroML_validatev1, Py_neuroConstruct ] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install HDF5 for pytables on macos-latest | |
| if: ${{ matrix.runs-on == 'macos-latest' }} | |
| run: | | |
| brew install hdf5 | |
| - name: Install OMV | |
| run: | | |
| pip install git+https://github.com/OpenSourceBrain/osb-model-validation | |
| pip install scipy sympy matplotlib cython pandas tables | |
| - name: Make neuroConstruct synapses | |
| if: ${{ matrix.engine == 'Py_neuroConstruct' }} | |
| run: | | |
| omv install Py_neuroConstruct | |
| cd neuroConstruct/pythonScripts/netbuild/ | |
| ./makeSyns.sh | |
| - name: Run OMV tests on engine ${{ matrix.engine }} | |
| run: | | |
| omv all -V --engine=${{ matrix.engine }} | |
| - name: Test more NetPyNE | |
| if: ${{ matrix.engine == 'jNeuroML_NetPyNE' }} | |
| run: | | |
| cd NeuroML2/test | |
| python LEMS_supbaskFigA2a_netpyne.py | |
| - name: OMV final version info | |
| run: | | |
| omv list -V # list installed engines | |
| env |