Function for replacing objectivePrior* by observables/measurements
#309
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Reformulate the given PEtab problem such that the objective priors are converted to measurements. This is done by adding a new observable for each prior and adding a corresponding measurement to the measurement table. The resulting optimization problem will be equivalent to the original problem. This is meant to be used for tools that do not support priors. Closes PEtab-dev#307
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## develop #309 +/- ##
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dilpath
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Oct 14, 2024
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| prior_contrib += norm.logpdf( | ||
| petab_problem_priors.x_nominal_free_scaled[ | ||
| petab_problem_priors.x_free_ids.index(parameter_id) | ||
| ], | ||
| loc=prior_pars[0], | ||
| scale=prior_pars[1], | ||
| ) |
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Looks useful, could be moved to some calculate_posterior_for_table method like calculate_llh_for_table
Co-authored-by: Dilan Pathirana <[email protected]>
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Reformulate the given PEtab problem such that the objective priors are converted to measurements. This is done by adding a new observable for each prior and adding a corresponding measurement to the measurement table. The resulting optimization problem will be equivalent to the original problem. This is meant to be used for tools that do not support priors.
Closes #307