Merge pull request #132 from PIH/LIB-353-create-visit-export

Lib 353 create visit export

configuration/reports/reportdescriptors/dataexports/sql/visits.sql

@@ -0,0 +1,137 @@
+-- set @startDate = '2016-01-01';
+-- set @endDate = '2016-12-31';
+
+select encounter_type_id  into @checkinEncTypeId from encounter_type where uuid = '55a0d3ea-a4d7-4e88-8f01-5aceb2d3c61b';
+
+drop temporary table if exists temp_visits;
+create temporary table temp_visits
+(patient_id			int(11),
+emr_id				varchar(50),
+visit_id			int(11),
+visit_date_started	datetime,
+visit_date_stopped	datetime,
+visit_date_entered	datetime,
+visit_creator		int(11),
+visit_user_entered	varchar(255),
+visit_type_id		int(11),
+visit_type			varchar(255),
+checkin_encounter_id	int(11),	
+visit_checkin		bit,
+visit_reason		varchar(255),
+location_id			int(11),
+visit_location		varchar(255),
+first_visit_this_year boolean,
+number_of_encounters int);
+
+insert into temp_visits(patient_id, visit_id, visit_date_started, visit_date_stopped, visit_date_entered, visit_type_id, visit_creator, location_id)
+select patient_id, visit_id, date_started, date_stopped, date_created, visit_type_id, creator, location_id  
+from visit v 
+where v.voided = 0
+AND ((date(v.date_started) >=@startDate) or @startDate is null)
+AND ((date(v.date_started) <=@endDate)  or @endDate is null);
+
+create index temp_visits_vi on temp_visits(visit_id);
+
+-- emr_id
+DROP TEMPORARY TABLE IF EXISTS temp_identifiers;
+CREATE TEMPORARY TABLE temp_identifiers
+(
+patient_id						INT(11),
+emr_id							VARCHAR(25)
+);
+
+INSERT INTO temp_identifiers(patient_id)
+select distinct patient_id from temp_visits;
+
+update temp_identifiers t set emr_id  = patient_identifier(patient_id, '0bc545e0-f401-11e4-b939-0800200c9a66');
+
+CREATE INDEX temp_identifiers_p ON temp_identifiers (patient_id);
+
+update temp_visits tv 
+inner join temp_identifiers ti on ti.patient_id = tv.patient_id
+set tv.emr_id = ti.emr_id;
+
+-- visit type
+update temp_visits t
+inner join visit_type vt on vt.visit_type_id = t.visit_type_id
+set t.visit_type = vt.name;
+
+-- locations
+DROP TEMPORARY TABLE IF EXISTS temp_locations;
+CREATE TEMPORARY TABLE temp_locations
+(
+location_id						INT(11),
+location_name					VARCHAR(255)
+);
+
+INSERT INTO temp_locations(location_id)
+select distinct location_id from temp_visits;
+
+update temp_locations t set location_name =  location_name(location_id);	
+
+CREATE INDEX temp_locations_li ON temp_locations (location_id);
+
+update temp_visits tv 
+inner join temp_locations tl on tl.location_id = tv.location_id
+set tv.visit_location = tl.location_name;
+
+-- user entered
+DROP TEMPORARY TABLE IF EXISTS temp_users;
+CREATE TEMPORARY TABLE temp_users
+(
+creator						INT(11),
+creator_name				VARCHAR(255)
+);
+
+INSERT INTO temp_users(creator)
+select distinct visit_creator from temp_visits;
+
+CREATE INDEX temp_users_c ON temp_users(creator);
+
+update temp_users t set creator_name  = person_name_of_user(creator);	
+
+update temp_visits tv 
+inner join temp_users tu on tu.creator = tv.visit_creator
+set tv.visit_user_entered = tu.creator_name;
+
+-- check-in
+update temp_visits v
+set v.checkin_encounter_id =  
+	(select max(e.encounter_id) from encounter e where e.visit_id = v.visit_id and e.encounter_type = @checkinEncTypeId and e.voided = 0);
+
+-- first visit this year
+drop temporary table if exists temp_visits_dates;
+create temporary table temp_visits_dates
+select patient_id, visit_id, visit_date_started from temp_visits;
+
+update temp_visits tv 
+set tv.first_visit_this_year = 1
+where not EXISTS 
+	(select 1 from temp_visits_dates vd 
+	where vd.patient_id = tv.patient_id
+	and vd.visit_date_started < tv.visit_date_started
+	and YEAR(vd.visit_date_started) = YEAR(tv.visit_date_started)
+	and vd.visit_id <> tv.visit_id);
+
+update temp_visits tv 
+set visit_reason = obs_value_coded_list(checkin_encounter_id, 'PIH','6189','en');
+
+update temp_visits tv 
+set number_of_encounters = 
+	(select count(*) from encounter e where e.visit_id = tv.visit_id and e.voided = 0);
+
+select 
+emr_id,
+visit_id,
+patient_id,
+visit_date_started,
+visit_date_stopped,
+visit_date_entered,
+visit_user_entered,
+visit_type,
+if(checkin_encounter_id is null, null, 1) as visit_checkin,
+visit_reason,
+visit_location,
+first_visit_this_year,
+number_of_encounters
+from temp_visits;

configuration/reports/reportdescriptors/dataexports/visits.yml

@@ -0,0 +1,28 @@
+key: "visitsdataexport"
+uuid: "f53316d4-5d2d-484c-bf90-02e7de3703a5"
+name: "Visits Data"
+description: "Visits Data"
+parameters:
+  - key: "startDate"
+    type: "java.util.Date"
+    label: "reporting.parameter.startDate"
+  - key: "endDate"
+    type: "java.util.Date"
+    label: "reporting.parameter.endDate"
+datasets:
+  - key: "visits"
+    type: "sql"
+    config: "sql/visits.sql"
+designs:
+  - type: "csv"
+    properties:
+      "characterEncoding": "ISO-8859-1"
+      "blacklistRegex": "[^\\p{InBasicLatin}\\p{L}]"
+      "dateFormat": "dd-MMM-yyyy HH:mm:ss"
+config:
+  category: "dataExport"
+  countries:
+    - "LIBERIA"
+  components:
+    - "dataExports"
+  privilege: "Task: clinical.reports"