Skip to content

Add extra check messages #337

Add extra check messages

Add extra check messages #337

Workflow file for this run

name: Install
on: [push, pull_request]
jobs:
skip_duplicate:
permissions:
actions: write
contents: read
runs-on: ubuntu-latest
outputs:
should_skip: ${{ steps.skip_check.outputs.should_skip }}
steps:
- id: skip_check
uses: fkirc/[email protected]
with:
cancel_others: 'true'
concurrent_skipping: 'same_content_newer'
Install:
needs: skip_duplicate
if: ${{ needs.skip_duplicate.outputs.should_skip != 'true' }}
runs-on: ubuntu-latest
steps:
- name: Checkout repository
uses: actions/checkout@v3
- name: Setup mamba
uses: conda-incubator/setup-miniconda@v3
with:
mamba-version: "*"
channels: conda-forge,bioconda,defaults
auto-activate-base: true
activate-environment: ""
- name: Install Snakemake 7.32
run: |
pip install 'snakemake==7.32.4' 'pulp<2.8'
- name: Create environments
run: |
snakemake --snakefile workflow/Snakefile --directory .test --configfile config/config.yaml .test/targets.yaml --conda-create-envs-only --use-conda -c1
Dry_run:
needs: skip_duplicate
if: ${{ needs.skip_duplicate.outputs.should_skip != 'true' }}
runs-on: ubuntu-latest
steps:
- name: Checkout repository
uses: actions/checkout@v3
- name: Setup mamba
uses: conda-incubator/setup-miniconda@v3
with:
mamba-version: "*"
channels: conda-forge,bioconda,defaults
auto-activate-base: true
activate-environment: ""
- name: Install Snakemake 7.32
run: |
pip install 'snakemake==7.32.4' 'pulp<2.8'
- name: Dry run
run: |
snakemake --snakefile workflow/Snakefile --directory .test --configfile config/config.yaml .test/targets.yaml --dry-run