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Update fmriprep requirement from <=24.0.1,>=23.2 to >=23.2,<=24.1.0 #444

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merged 1 commit into from
Sep 23, 2024

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@dependabot dependabot bot commented on behalf of github Sep 23, 2024

Updates the requirements on fmriprep to permit the latest version.

Changelog

Sourced from fmriprep's changelog.

24.1.0 (September 16, 2024)

New feature release in the 24.1.x series.

Handling of gradient echo fieldmaps is improved.

  • FIX: Select volumetric dseg.tsv from recent TemplateFlow releases (#3257)
  • RF: Adapt to less T1w-centric smriprep (#3333)
  • RF: Use acres over vendored data loader (#3323)
  • DOC: Add benchmark page (#3312)
  • MAINT: Move to tox to simplify test/CI setup (#3326)
  • CI: Fix expected outputs for fieldmaps (#3321)

24.0.1 (July 16, 2024)

Bug fix release in the 24.0.x series.

This release resolves a bug with multi-volume single-band references. If multiple volumes are found, they are processed in the same way as the BOLD series is processed to produce a motion-correction reference.

  • FIX: Validate and summarize multi-volume sbrefs (#3320)
  • DOC: Address errors/warnings in RTD builds (#3325)
  • DOC: Read html_baseurl from RTD environment, if available (#3324)

24.0.0 (June 17, 2024)

New feature release in the 24.0.x series.

This release is an incremental improvement on 23.2.x, with some fixes for bugs discovered in the updated workflow.

New features include separation of HTML reports by session for subjects with many BOLD runs, a new --fs-no-resume option to improve interoperability with less typical FreeSurfer directories, such as those generated by longitudinal FreeSurfer or FastSurfer, and adoption of DatasetLinks and BIDS-URIs, to follow the recommendations of recent versions of BIDS.

With thanks to Dimitri Papadopoulos, Basile Pinsard, Celine Provins, Taylor Salo and Wang Hao-Ting for their contributions!

  • FIX: Add "double" type to allowed DisplacementFieldTransform (#3287)
  • FIX: Require recent templateflow, select correct aparc dseg.tsv (#3256)
  • FIX: Ensure proper templates are retrieved with sloppy (#3251)
  • FIX: Delete summary from functional report when separated by sessions (#3223)
  • FIX: Support lists in bids filter file containing null or * (#3215)
  • FIX: Re-enable anat fasttrack for dataset without t1w (#3202)
  • ENH: Use BIDSURI in init_ds_boldmask_wf (#3297)
  • ENH: Add templateflow to DatasetLinks (#3267)

... (truncated)

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Updates the requirements on [fmriprep](https://github.com/nipreps/fmriprep) to permit the latest version.
- [Release notes](https://github.com/nipreps/fmriprep/releases)
- [Changelog](https://github.com/nipreps/fmriprep/blob/master/CHANGES.rst)
- [Commits](nipreps/fmriprep@23.2.0...24.1.0)

---
updated-dependencies:
- dependency-name: fmriprep
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added ignore-for-release PRs that shouldn't be included with release notes. maintenance Issues/PRs related to maintenance. Dependency versions, dependencies, etc. labels Sep 23, 2024
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Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 84.34%. Comparing base (ef2dd7e) to head (315bac0).

Additional details and impacted files
@@           Coverage Diff           @@
##             main     #444   +/-   ##
=======================================
  Coverage   84.34%   84.34%           
=======================================
  Files          37       37           
  Lines        3986     3986           
=======================================
  Hits         3362     3362           
  Misses        624      624           

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@tsalo tsalo merged commit 6b4807e into main Sep 23, 2024
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@dependabot dependabot bot deleted the dependabot/pip/fmriprep-gte-23.2-and-lte-24.1.0 branch September 23, 2024 12:49
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