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Update parser.py
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smeisler authored Sep 23, 2024
1 parent 6e096ca commit 69f3fd7
Showing 1 changed file with 2 additions and 3 deletions.
5 changes: 2 additions & 3 deletions qsirecon/cli/parser.py
Original file line number Diff line number Diff line change
Expand Up @@ -476,7 +476,6 @@ def parse_args(args=None, namespace=None):

# Run ingression if necessary
if config.workflow.input_type in ("hcpya", "ukb"):
import os.path as op
import shutil

from ingress2qsirecon.data import load_resource
Expand All @@ -487,8 +486,8 @@ def parse_args(args=None, namespace=None):
config.execution.bids_dir = work_dir / "bids"

# Make fake BIDS files
bids_scaffold = str(load_resource("bids_scaffold"))
if not op.exists(op.join(config.execution.bids_dir, "dataset_description.json")):
bids_scaffold = load_resource("bids_scaffold")
if not (config.execution.bids_dir / "dataset_description.json").exists():
shutil.copytree(
bids_scaffold,
config.execution.bids_dir,
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