one more round

PennLINC · Aug 13, 2024 · ae1457b · ae1457b
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Showing 10 changed files with 44 additions and 41 deletions.
diff --git a/qsirecon/tests/data/amico_noddi_outputs.txt b/qsirecon/tests/data/amico_noddi_outputs.txt
@@ -1,13 +1,10 @@
-qsirecon
 dataset_description.json
-qsirecon/dwiqc.json
 logs
 logs/CITATION.bib
 logs/CITATION.html
 logs/CITATION.md
 logs/CITATION.tex
-qsirecon/sub-PNC
-qsirecon/sub-PNC.html
+qsirecon
 qsirecon
 qsirecon-NODDI
 qsirecon-NODDI/sub-PNC
@@ -18,4 +15,8 @@ qsirecon-NODDI/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_model-no
 qsirecon-NODDI/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_model-noddi_mdp-isovf_dwimap.nii.gz
 qsirecon-NODDI/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_model-noddi_mdp-od_dwimap.nii.gz
 qsirecon-NODDI/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_model-noddi_mfp-direction_dwimap.nii.gz
+qsirecon/dwiqc.json
 qsirecon/sub-PNC
+qsirecon/sub-PNC
+qsirecon/sub-PNC.html
+sub-PNC
diff --git a/qsirecon/tests/data/autotrack_outputs.txt b/qsirecon/tests/data/autotrack_outputs.txt
@@ -1,13 +1,10 @@
-qsirecon
 dataset_description.json
-qsirecon/dwiqc.json
 logs
 logs/CITATION.bib
 logs/CITATION.html
 logs/CITATION.md
 logs/CITATION.tex
-sub-ABCD
-qsirecon/sub-ABCD.html
+qsirecon
 qsirecon
 qsirecon-DSIStudio
 qsirecon-DSIStudio/sub-ABCD
@@ -17,4 +14,7 @@ qsirecon-DSIStudio/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_bun
 qsirecon-DSIStudio/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_bundlestats.csv
 qsirecon-DSIStudio/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_dwimap.fib.gz
 qsirecon-DSIStudio/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_mapping.map.gz
+qsirecon/dwiqc.json
 qsirecon/sub-ABCD
+qsirecon/sub-ABCD.html
+sub-ABCD
diff --git a/qsirecon/tests/data/dipy_dki_outputs.txt b/qsirecon/tests/data/dipy_dki_outputs.txt
@@ -1,13 +1,10 @@
-qsirecon
 dataset_description.json
-qsirecon/dwiqc.json
 logs
 logs/CITATION.bib
 logs/CITATION.html
 logs/CITATION.md
 logs/CITATION.tex
-sub-ABCD
-qsirecon/sub-ABCD.html
+qsirecon
 qsirecon
 qsirecon-DKI
 qsirecon-DKI/sub-ABCD
@@ -21,4 +18,7 @@ qsirecon-DKI/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-dki
 qsirecon-DKI/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-dki_mdp-RD_dwimap.nii.gz
 qsirecon-DKI/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-dki_mdp-RK_dwimap.nii.gz
 qsirecon-DKI/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-tensor_mdp-FA_dwimap.nii.gz
+qsirecon/dwiqc.json
 qsirecon/sub-ABCD
+qsirecon/sub-ABCD.html
+sub-ABCD
diff --git a/qsirecon/tests/data/dipy_mapmri_outputs.txt b/qsirecon/tests/data/dipy_mapmri_outputs.txt
@@ -1,13 +1,10 @@
-qsirecon
 dataset_description.json
-qsirecon/dwiqc.json
 logs
 logs/CITATION.bib
 logs/CITATION.html
 logs/CITATION.md
 logs/CITATION.tex
-sub-ABCD
-qsirecon/sub-ABCD.html
+qsirecon
 qsirecon
 qsirecon-DIPYMAPMRI
 qsirecon-DIPYMAPMRI/sub-ABCD
@@ -23,4 +20,7 @@ qsirecon-mapmri_recon/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_
 qsirecon-mapmri_recon/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-mapmri_mdp-RTOP_dwimap.nii.gz
 qsirecon-mapmri_recon/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-mapmri_mdp-RTPP_dwimap.nii.gz
 qsirecon-mapmri_recon/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-mapmri_mfp-lapnorm_dwimap.nii.gz
+qsirecon/dwiqc.json
 qsirecon/sub-ABCD
+qsirecon/sub-ABCD.html
+sub-ABCD
diff --git a/qsirecon/tests/data/mrtrix3_recon_outputs.txt b/qsirecon/tests/data/mrtrix3_recon_outputs.txt
@@ -1,13 +1,10 @@
-qsirecon
 dataset_description.json
-qsirecon/dwiqc.json
 logs
 logs/CITATION.bib
 logs/CITATION.html
 logs/CITATION.md
 logs/CITATION.tex
-sub-ABCD
-qsirecon/sub-ABCD.html
+qsirecon
 qsirecon
 qsirecon-MRtrix3_act-FAST
 qsirecon-MRtrix3_act-FAST/sub-ABCD
@@ -49,4 +46,7 @@ qsirecon-anat/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_atlas-sc
 qsirecon-anat/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_atlas-schaefer400_dseg.mif.gz
 qsirecon-anat/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_atlas-schaefer400_dseg.nii.gz
 qsirecon-anat/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_atlas-schaefer400_dseg.txt
+qsirecon/dwiqc.json
+qsirecon/sub-ABCD
+qsirecon/sub-ABCD.html
 sub-ABCD
diff --git a/qsirecon/tests/data/mrtrix_singleshell_ss3t_act_outputs.txt b/qsirecon/tests/data/mrtrix_singleshell_ss3t_act_outputs.txt
@@ -1,13 +1,10 @@
-qsirecon
 dataset_description.json
-qsirecon/dwiqc.json
 logs
 logs/CITATION.bib
 logs/CITATION.html
 logs/CITATION.md
 logs/CITATION.tex
-qsirecon/sub-PNC
-qsirecon/sub-PNC.html
+qsirecon
 qsirecon
 qsirecon-MRtrix3_fork-SS3T_act-FAST
 qsirecon-MRtrix3_fork-SS3T_act-FAST/sub-PNC
@@ -49,4 +46,8 @@ qsirecon-anat/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_atlas-sch
 qsirecon-anat/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_atlas-schaefer400_dseg.mif.gz
 qsirecon-anat/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_atlas-schaefer400_dseg.nii.gz
 qsirecon-anat/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_atlas-schaefer400_dseg.txt
+qsirecon/dwiqc.json
 qsirecon/sub-PNC
+qsirecon/sub-PNC
+qsirecon/sub-PNC.html
+sub-PNC
diff --git a/qsirecon/tests/data/mrtrix_singleshell_ss3t_noact_outputs.txt b/qsirecon/tests/data/mrtrix_singleshell_ss3t_noact_outputs.txt
@@ -1,13 +1,10 @@
-qsirecon
 dataset_description.json
-qsirecon/dwiqc.json
 logs
 logs/CITATION.bib
 logs/CITATION.html
 logs/CITATION.md
 logs/CITATION.tex
-qsirecon/sub-PNC
-qsirecon/sub-PNC.html
+qsirecon
 qsirecon
 qsirecon-MRtrix3_fork-SS3T_act-None
 qsirecon-MRtrix3_fork-SS3T_act-None/sub-PNC
@@ -49,4 +46,8 @@ qsirecon-anat/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_atlas-sch
 qsirecon-anat/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_atlas-schaefer400_dseg.mif.gz
 qsirecon-anat/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_atlas-schaefer400_dseg.nii.gz
 qsirecon-anat/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_atlas-schaefer400_dseg.txt
+qsirecon/dwiqc.json
 qsirecon/sub-PNC
+qsirecon/sub-PNC
+qsirecon/sub-PNC.html
+sub-PNC
diff --git a/qsirecon/tests/data/pyafq_recon_full_outputs.txt b/qsirecon/tests/data/pyafq_recon_full_outputs.txt
@@ -1,13 +1,10 @@
-qsirecon
 dataset_description.json
-qsirecon/dwiqc.json
 logs
 logs/CITATION.bib
 logs/CITATION.html
 logs/CITATION.md
 logs/CITATION.tex
-sub-ABCD
-qsirecon/sub-ABCD.html
+qsirecon
 qsirecon
 qsirecon-PYAFQ
 qsirecon-PYAFQ/sub-ABCD
@@ -111,4 +108,7 @@ qsirecon-PYAFQ/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_dwimap/
 qsirecon-PYAFQ/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_dwimap/viz_core_bundles/sub-ABCD_acq-10per000_coordsys-RASMM_trkmethod-probCSD_recogmethod-AFQ_desc-LeftCorticospinalviz_dwi.html
 qsirecon-PYAFQ/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_dwimap/viz_core_bundles/sub-ABCD_acq-10per000_coordsys-RASMM_trkmethod-probCSD_recogmethod-AFQ_desc-LeftSuperiorLongitudinalviz_dwi.html
 qsirecon-PYAFQ/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_dwimap/viz_core_bundles/sub-ABCD_acq-10per000_coordsys-RASMM_trkmethod-probCSD_recogmethod-AFQ_desc-RightCorticospinalviz_dwi.html
+qsirecon/dwiqc.json
 qsirecon/sub-ABCD
+qsirecon/sub-ABCD.html
+sub-ABCD
diff --git a/qsirecon/tests/data/scalar_mapper_outputs.txt b/qsirecon/tests/data/scalar_mapper_outputs.txt
@@ -1,13 +1,10 @@
-qsirecon
 dataset_description.json
-qsirecon/dwiqc.json
 logs
 logs/CITATION.bib
 logs/CITATION.html
 logs/CITATION.md
 logs/CITATION.tex
-sub-ABCD
-qsirecon/sub-ABCD.html
+qsirecon
 qsirecon
 qsirecon-DIPYDKI
 qsirecon-DIPYDKI/sub-ABCD
@@ -73,4 +70,7 @@ qsirecon-DSIStudio/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_mod
 qsirecon-DSIStudio/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-tensor_mfp-tyy_dwimap.nii.gz
 qsirecon-DSIStudio/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-tensor_mfp-tyz_dwimap.nii.gz
 qsirecon-DSIStudio/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-tensor_mfp-tzz_dwimap.nii.gz
-qsirecon/sub-ABCD
+qsirecon/dwiqc.json
+qsirecon/sub-ABCD
+qsirecon/sub-ABCD.html
+sub-ABCD
diff --git a/qsirecon/tests/data/tortoise_recon_outputs.txt b/qsirecon/tests/data/tortoise_recon_outputs.txt
@@ -1,13 +1,10 @@
-qsirecon
 dataset_description.json
-qsirecon/dwiqc.json
 logs
 logs/CITATION.bib
 logs/CITATION.html
 logs/CITATION.md
 logs/CITATION.tex
-sub-ABCD
-qsirecon/sub-ABCD.html
+qsirecon
 qsirecon
 qsirecon-TORTOISE
 qsirecon-TORTOISE/sub-ABCD
@@ -25,4 +22,7 @@ qsirecon-TORTOISE/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_mode
 qsirecon-TORTOISE/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-tensor_mdp-li_dwimap.nii.gz
 qsirecon-TORTOISE/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-tensor_mdp-rd_dwimap.nii.gz
 qsirecon-TORTOISE/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-tensor_mfp-AM_dwimap.nii.gz
+qsirecon/dwiqc.json
 qsirecon/sub-ABCD
+qsirecon/sub-ABCD.html
+sub-ABCD