Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update niworkflows requirement from <=1.10,>=1.9 to >=1.9,<=1.11.0 #96

Closed

Conversation

dependabot[bot]
Copy link
Contributor

@dependabot dependabot bot commented on behalf of github Aug 26, 2024

Updates the requirements on niworkflows to permit the latest version.

Changelog

Sourced from niworkflows's changelog.

1.11.0 (July 31, 2024)

New minor release to start the 1.11.x series.

The major changes include:

  • a deprecation to T1w-only based template processing
  • addition of a new dependency acres for accessing package data

However, this is still backwards compatible with the 1.10.x series.

  • MAINT: Depend on acres for data access
  • ENH: Add PrepareDerivative/SaveDerivative interfaces (#885)
  • ENH: Make template dimensions support T2w as well (#879)
  • ENH: Modify FSSource to output T2 (#868)
  • FIX: Set cal_max in the NIfTI header for visualization after IntensityClip (#878)
  • FIX: Remove accidental MRIQC dependency, allow app config to be passed to workflow plugin (#876)
  • TEST: Fix plugin invocation, use an initializer that can be verified (#880)

1.10.2 (June 10, 2024)

Bug-fix release in the 1.10.x series

  • ENH: Modify FSSource to output T2 (#868)
  • STY: Apply ruff/flake8-implicit-str-concat rule ISC001 (#870)
  • STY: Remove extraneous quotes (#859)
  • STY: Apply assorted ruff/refurb rules (#867)
  • MNT: update vendored docs files (#834)
  • MNT: Fix deprecation error in CI (#866)

1.10.1 (March 06, 2024)

Bug-fix release in the 1.10.x series

  • ENH: Allow alternative extensions when creating a BIDS skeleton (#858)
  • ENH: Parsing for space+cohort structure (#857)

1.10.0 (December 13, 2023)

New feature release in the 1.10.x series.

This release has several improvements targeting ASLPrep and MRIQC, particularly around BIDS tooling and workflow plugins. We also drop our use of Convert3D in favor of nitransforms, allowing downstream projects to remove this non-Python dependency as needed.

Some fixes change workflow structure, so please test before upgrading.

  • FIX: Copy header to ensure mask is really aligned (#844)
  • FIX: Correctly use ignore_initial_volumes in ConfoundsCorrelationPlot (#846)

... (truncated)

Commits
  • f972df5 DOC: Add acres to dependencies
  • 8eae6ae rel(1.11.0): update changes
  • 881bfd0 MAINT: Replace Loader class with acres
  • f765e53 Merge pull request #885 from effigies/rf/split-derivatives-datasink
  • 8c14cbe TEST: Parametrize all DerivativesDataSink tests
  • b297129 PY39: Define strict zip if not builtin
  • dac204c DOC: Fix docstring
  • a526794 Update niworkflows/interfaces/bids.py
  • edf450b STY: Pacify flake8
  • 23e1bbc TEST: Test singular and decomposed interfaces
  • Additional commits viewable in compare view

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.


Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR:

  • @dependabot rebase will rebase this PR
  • @dependabot recreate will recreate this PR, overwriting any edits that have been made to it
  • @dependabot merge will merge this PR after your CI passes on it
  • @dependabot squash and merge will squash and merge this PR after your CI passes on it
  • @dependabot cancel merge will cancel a previously requested merge and block automerging
  • @dependabot reopen will reopen this PR if it is closed
  • @dependabot close will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually
  • @dependabot show <dependency name> ignore conditions will show all of the ignore conditions of the specified dependency
  • @dependabot ignore this major version will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself)
  • @dependabot ignore this minor version will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself)
  • @dependabot ignore this dependency will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)

@codecov-commenter
Copy link

codecov-commenter commented Aug 26, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 33.68%. Comparing base (361e27f) to head (9e02031).

Additional details and impacted files
@@           Coverage Diff           @@
##             main      #96   +/-   ##
=======================================
  Coverage   33.68%   33.68%           
=======================================
  Files          56       56           
  Lines        6937     6937           
  Branches      910      910           
=======================================
  Hits         2337     2337           
  Misses       4496     4496           
  Partials      104      104           

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

Updates the requirements on [niworkflows](https://github.com/nipreps/niworkflows) to permit the latest version.
- [Release notes](https://github.com/nipreps/niworkflows/releases)
- [Changelog](https://github.com/nipreps/niworkflows/blob/master/CHANGES.rst)
- [Commits](nipreps/niworkflows@1.9.0...1.11.0)

---
updated-dependencies:
- dependency-name: niworkflows
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot force-pushed the dependabot/pip/niworkflows-gte-1.9-and-lte-1.11.0 branch from b0ecdce to 9e02031 Compare August 28, 2024 19:10
@tsalo tsalo closed this Sep 13, 2024
Copy link
Contributor Author

dependabot bot commented on behalf of github Sep 13, 2024

OK, I won't notify you again about this release, but will get in touch when a new version is available. If you'd rather skip all updates until the next major or minor version, let me know by commenting @dependabot ignore this major version or @dependabot ignore this minor version. You can also ignore all major, minor, or patch releases for a dependency by adding an ignore condition with the desired update_types to your config file.

If you change your mind, just re-open this PR and I'll resolve any conflicts on it.

@dependabot dependabot bot deleted the dependabot/pip/niworkflows-gte-1.9-and-lte-1.11.0 branch September 13, 2024 16:35
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants