ufl4rom CI #268
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| name: ufl4rom CI | |
| on: | |
| push: | |
| branches: | |
| - "**" | |
| pull_request: | |
| branches: | |
| - main | |
| schedule: | |
| - cron: "0 21 * * SAT" | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| include: | |
| - backend: none | |
| container: debian:testing | |
| setup_git: | | |
| export DEBIAN_FRONTEND="noninteractive" | |
| apt update -y -q | |
| apt install -y -qq git | |
| setup_container: | | |
| export DEBIAN_FRONTEND="noninteractive" | |
| apt update -y -q | |
| apt install -y -qq python3-mpi4py python3-pip | |
| rm /usr/lib/python3.*/EXTERNALLY-MANAGED | |
| python3 -m pip -q install git+https://github.com/FEniCS/ufl.git | |
| - backend: dolfinx-real | |
| container: ghcr.io/fenics/dolfinx/dolfinx:nightly | |
| setup_git: "" | |
| setup_container: | | |
| . /usr/local/bin/dolfinx-real-mode | |
| echo "PETSC_ARCH=$PETSC_ARCH" >> $GITHUB_ENV | |
| echo "LD_LIBRARY_PATH=$LD_LIBRARY_PATH" >> $GITHUB_ENV | |
| echo "PYTHONPATH=$PYTHONPATH" >> $GITHUB_ENV | |
| echo "PKG_CONFIG_PATH=$PKG_CONFIG_PATH" >> $GITHUB_ENV | |
| echo "CMAKE_PREFIX_PATH=$CMAKE_PREFIX_PATH" >> $GITHUB_ENV | |
| - backend: dolfinx-complex | |
| container: ghcr.io/fenics/dolfinx/dolfinx:nightly | |
| setup_git: "" | |
| setup_container: | | |
| . /usr/local/bin/dolfinx-complex-mode | |
| echo "PETSC_ARCH=$PETSC_ARCH" >> $GITHUB_ENV | |
| echo "LD_LIBRARY_PATH=$LD_LIBRARY_PATH" >> $GITHUB_ENV | |
| echo "PYTHONPATH=$PYTHONPATH" >> $GITHUB_ENV | |
| echo "PKG_CONFIG_PATH=$PKG_CONFIG_PATH" >> $GITHUB_ENV | |
| echo "CMAKE_PREFIX_PATH=$CMAKE_PREFIX_PATH" >> $GITHUB_ENV | |
| - backend: firedrake-real | |
| container: firedrakeproject/firedrake | |
| setup_git: "" | |
| setup_container: | | |
| echo "/home/firedrake/firedrake/bin" >> $GITHUB_PATH | |
| - backend: firedrake-complex | |
| container: firedrakeproject/firedrake-complex | |
| setup_git: "" | |
| setup_container: | | |
| echo "/home/firedrake/firedrake/bin" >> $GITHUB_PATH | |
| fail-fast: false | |
| container: | |
| image: ${{ matrix.container }} | |
| options: --user root | |
| steps: | |
| - name: Setup git | |
| run: ${{ matrix.setup_git }} | |
| - uses: actions/checkout@v4 | |
| - name: Setup container | |
| run: ${{ matrix.setup_container }} | |
| - name: Install ufl4rom | |
| run: | | |
| BACKEND=${{ matrix.backend }} | |
| BACKEND=backend_${BACKEND%-*} | |
| python3 -m pip install .[${BACKEND},docs,lint,tests] | |
| shell: bash | |
| - name: Clean build files | |
| run: | | |
| git config --global --add safe.directory $PWD | |
| git clean -xdf | |
| - name: Update mypy configuration | |
| run: | | |
| if [[ "${{ matrix.backend }}" == "dolfinx-"* ]]; then | |
| : | |
| elif [[ "${{ matrix.backend }}" == "firedrake-"* || "${{ matrix.backend }}" == "none" ]]; then | |
| sed -i 's@ # "dolfinx",@ "dolfinx",@g' pyproject.toml | |
| sed -i 's@ # "dolfinx.*",@ "dolfinx.*",@g' pyproject.toml | |
| else | |
| echo "Invalid backend" | |
| exit 1 | |
| fi | |
| shell: bash | |
| - name: Run ruff | |
| run: | | |
| python3 -m ruff check . | |
| - name: Run isort | |
| run: | | |
| python3 -m isort --check --diff . | |
| - name: Run mypy | |
| run: | | |
| python3 -m mypy . | |
| - name: Run yamllint | |
| run: | | |
| python3 -m yamllint -d "{extends: default, rules: {document-start: {present: false}, line-length: disable, truthy: {check-keys: false}}}" . | |
| - name: Run documentation generation | |
| run: | | |
| cd docs && python3 -m sphinx -W -b html . build/html | |
| - name: Run unit tests | |
| run: | | |
| COVERAGE_FILE=.coverage_unit python3 -m coverage run --source=ufl4rom -m pytest --random-order tests/unit | |
| - name: Run integration tests | |
| run: | | |
| COVERAGE_FILE=.coverage_integration python3 -m coverage run --source=ufl4rom -m pytest --random-order tests/integration | |
| - name: Upload coverage report as an artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-${{ matrix.backend }} | |
| path: .coverage* | |
| retention-days: 1 | |
| combine_coverage_reports: | |
| runs-on: ubuntu-latest | |
| container: debian:testing | |
| needs: [test] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install dependencies | |
| run: | | |
| export DEBIAN_FRONTEND="noninteractive" | |
| apt update -y -q | |
| apt install -y -qq python3-pip | |
| rm /usr/lib/python3.*/EXTERNALLY-MANAGED | |
| python3 -m pip -q install coverage | |
| - name: Download coverage reports from artifacts | |
| uses: actions/download-artifact@v4 | |
| - name: Combine coverage reports | |
| run: | | |
| python3 -m coverage combine coverage-*/.coverage* | |
| python3 -m coverage report --fail-under=100 --show-missing --skip-covered | |
| warn: | |
| runs-on: ubuntu-latest | |
| if: github.repository == 'RBniCS/ufl4rom' && github.ref == 'refs/heads/main' && github.event_name == 'schedule' | |
| steps: | |
| - name: Warn if scheduled workflow is about to be disabled | |
| uses: fem-on-colab/warn-workflow-about-to-be-disabled-action@main | |
| with: | |
| workflow-filename: ci.yml | |
| days-elapsed: 50 |