update example dataset to add marker discrepancy

RGLab · May 27, 2020 · df3864e · df3864e
1 parent b699ec3
commit df3864e
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diff --git a/R/cqc_check.R b/R/cqc_check.R
@@ -256,13 +256,11 @@ diff.cqc_check_panel <- function(x, ...) {
 #' @param vars variable to split by. Determined automatically.
 #' @param ... Additional arguments not for the user. Ignore.
 #' @examples
-#' \dontrun{
 #' fcs_files <- list.files(system.file("extdata", "GvHD_QC", package = "cytoqc"), full.names = TRUE)
 #' qc_cf_list <- cqc_load_fcs(fcs_files)
 #' 
 #' channel_groups <- cqc_check(qc_cf_list, type = "channel")
 #' diff(channel_groups)
-#' }
 #' @importFrom dplyr group_split inner_join anti_join
 #' @importFrom purrr reduce map map_dfr
 #' @export

diff --git a/inst/extdata/GvHD_QC/s10a01.fcs b/inst/extdata/GvHD_QC/s10a01.fcs
diff --git a/inst/extdata/GvHD_QC/s10a02.fcs b/inst/extdata/GvHD_QC/s10a02.fcs
diff --git a/inst/extdata/GvHD_QC/s10a03.fcs b/inst/extdata/GvHD_QC/s10a03.fcs
diff --git a/inst/extdata/GvHD_QC/s10a04.fcs b/inst/extdata/GvHD_QC/s10a04.fcs
diff --git a/inst/extdata/GvHD_QC/s10a05.fcs b/inst/extdata/GvHD_QC/s10a05.fcs
diff --git a/inst/extdata/GvHD_QC/s10a06.fcs b/inst/extdata/GvHD_QC/s10a06.fcs
diff --git a/inst/extdata/GvHD_QC/s10a07.fcs b/inst/extdata/GvHD_QC/s10a07.fcs
diff --git a/inst/extdata/GvHD_QC/s5a01.fcs b/inst/extdata/GvHD_QC/s5a01.fcs
diff --git a/inst/extdata/GvHD_QC/s5a02.fcs b/inst/extdata/GvHD_QC/s5a02.fcs
diff --git a/inst/extdata/GvHD_QC/s5a03.fcs b/inst/extdata/GvHD_QC/s5a03.fcs
diff --git a/inst/extdata/GvHD_QC/s5a04.fcs b/inst/extdata/GvHD_QC/s5a04.fcs
diff --git a/inst/extdata/GvHD_QC/s5a05.fcs b/inst/extdata/GvHD_QC/s5a05.fcs
diff --git a/inst/extdata/GvHD_QC/s5a06.fcs b/inst/extdata/GvHD_QC/s5a06.fcs
diff --git a/inst/extdata/GvHD_QC/s5a07.fcs b/inst/extdata/GvHD_QC/s5a07.fcs
diff --git a/inst/extdata/GvHD_QC/s6a01.fcs b/inst/extdata/GvHD_QC/s6a01.fcs
diff --git a/inst/extdata/GvHD_QC/s6a02.fcs b/inst/extdata/GvHD_QC/s6a02.fcs
diff --git a/inst/extdata/GvHD_QC/s6a03.fcs b/inst/extdata/GvHD_QC/s6a03.fcs
diff --git a/inst/extdata/GvHD_QC/s6a04.fcs b/inst/extdata/GvHD_QC/s6a04.fcs
diff --git a/inst/extdata/GvHD_QC/s6a05.fcs b/inst/extdata/GvHD_QC/s6a05.fcs
diff --git a/inst/extdata/GvHD_QC/s6a06.fcs b/inst/extdata/GvHD_QC/s6a06.fcs
diff --git a/inst/extdata/GvHD_QC/s6a07.fcs b/inst/extdata/GvHD_QC/s6a07.fcs
diff --git a/inst/extdata/GvHD_QC/s7a01.fcs b/inst/extdata/GvHD_QC/s7a01.fcs
diff --git a/inst/extdata/GvHD_QC/s7a02.fcs b/inst/extdata/GvHD_QC/s7a02.fcs
diff --git a/inst/extdata/GvHD_QC/s7a03.fcs b/inst/extdata/GvHD_QC/s7a03.fcs
diff --git a/inst/extdata/GvHD_QC/s7a04.fcs b/inst/extdata/GvHD_QC/s7a04.fcs
diff --git a/inst/extdata/GvHD_QC/s7a05.fcs b/inst/extdata/GvHD_QC/s7a05.fcs
diff --git a/inst/extdata/GvHD_QC/s7a06.fcs b/inst/extdata/GvHD_QC/s7a06.fcs
diff --git a/inst/extdata/GvHD_QC/s7a07.fcs b/inst/extdata/GvHD_QC/s7a07.fcs
diff --git a/inst/extdata/GvHD_QC/s9a01.fcs b/inst/extdata/GvHD_QC/s9a01.fcs
diff --git a/inst/extdata/GvHD_QC/s9a02.fcs b/inst/extdata/GvHD_QC/s9a02.fcs
diff --git a/inst/extdata/GvHD_QC/s9a03.fcs b/inst/extdata/GvHD_QC/s9a03.fcs
diff --git a/inst/extdata/GvHD_QC/s9a04.fcs b/inst/extdata/GvHD_QC/s9a04.fcs
diff --git a/inst/extdata/GvHD_QC/s9a05.fcs b/inst/extdata/GvHD_QC/s9a05.fcs
diff --git a/inst/extdata/GvHD_QC/s9a06.fcs b/inst/extdata/GvHD_QC/s9a06.fcs
diff --git a/inst/extdata/GvHD_QC/s9a07.fcs b/inst/extdata/GvHD_QC/s9a07.fcs