The initial release of the Florida Center for Coastal and Human Health Metagenomics Workflow.
Databases are hardcoded for the FCH server and should be modified for other institutions.
This is a wrapper program that calls software to preprocess raw reads, annotate high-quality reads with taxonomy, assemble high-quality reads, create anvi'o databases and profiles, bin contigs, and annotate contigs for biosynthetic gene clusters.
Install environments using yaml files.
Contact René Xavier with any concerns ([email protected]) or post an issue here.