Merge pull request #28 from ResearchObject/rm_rocrate_ctx

Remove reference to RO-Crate context from the JSON(LD) files
ResearchObject · Jul 22, 2024 · 5c7a33b · 5c7a33b
2 parents 2e0f58e + 7429de8
commit 5c7a33b
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Showing 24 changed files with 534 additions and 599 deletions.
diff --git a/context.json b/context.json
@@ -1,8 +1,8 @@
-[
-    "https://w3id.org/ro/crate/1.1/context",
-    {
+{
+    "@context": {
         "Person": "https://w3id.org/ro/terms/#Person",
         "fullName": "https://w3id.org/ro/terms/#fullName",
-        "friend_of": "https://w3id.org/ro/terms/#friend_of"
+        "friend_of": "https://w3id.org/ro/terms/#friend_of",
+        "sdConformsTo": "https://w3id.org/ro/terms/#sdConformsTo"
     }
-]
+}
diff --git a/context.jsonld b/context.jsonld
@@ -1,8 +1,8 @@
-[
-    "https://w3id.org/ro/crate/1.1/context",
-    {
+{
+    "@context": {
         "Person": "https://w3id.org/ro/terms/#Person",
         "fullName": "https://w3id.org/ro/terms/#fullName",
-        "friend_of": "https://w3id.org/ro/terms/#friend_of"
+        "friend_of": "https://w3id.org/ro/terms/#friend_of",
+        "sdConformsTo": "https://w3id.org/ro/terms/#sdConformsTo"
     }
-]
+}
diff --git a/copo/context.json b/copo/context.json
@@ -1,7 +1,5 @@
 {
-  "@context": [
-    "https://w3id.org/ro/crate/1.1/context",
-    {
+  "@context": {
       "associated_tol_project": "https://w3id.org/ro/terms/copo#associated_tol_project",
       "biosampleAccession": "https://w3id.org/ro/terms/copo#biosampleAccession",
       "boldAccession": "https://w3id.org/ro/terms/copo#boldAccession",
@@ -90,5 +88,4 @@
     "VOUCHER_INSTITUTION": "https://w3id.org/ro/terms/sample#VOUCHER_INSTITUTION",
     "OTHER_INFORMATION": "https://w3id.org/ro/terms/sample#OTHER_INFORMATION"
     }
-  ]
 }
diff --git a/copo/context.jsonld b/copo/context.jsonld
@@ -1,7 +1,5 @@
 {
-  "@context": [
-    "https://w3id.org/ro/crate/1.1/context",
-    {
+  "@context": {
       "associated_tol_project": "https://w3id.org/ro/terms/copo#associated_tol_project",
       "biosampleAccession": "https://w3id.org/ro/terms/copo#biosampleAccession",
       "boldAccession": "https://w3id.org/ro/terms/copo#boldAccession",
@@ -90,5 +88,4 @@
     "VOUCHER_INSTITUTION": "https://w3id.org/ro/terms/sample#VOUCHER_INSTITUTION",
     "OTHER_INFORMATION": "https://w3id.org/ro/terms/sample#OTHER_INFORMATION"
     }
-  ]
 }
diff --git a/criminalcharacters/context.json b/criminalcharacters/context.json
@@ -1,10 +1,7 @@
 {
-    "@context": [
-        "https://w3id.org/ro/crate/1.1/context",
-        {
-            "education": "https://w3id.org/ro/terms/criminalcharacters#education",
-            "interests": "https://w3id.org/ro/terms/criminalcharacters#interests",
-            "Person": "https://w3id.org/ro/terms/criminalcharacters#Person"
-        }
-    ]
+    "@context": {
+        "education": "https://w3id.org/ro/terms/criminalcharacters#education",
+        "interests": "https://w3id.org/ro/terms/criminalcharacters#interests",
+        "Person": "https://w3id.org/ro/terms/criminalcharacters#Person"
+    }
 }
diff --git a/criminalcharacters/context.jsonld b/criminalcharacters/context.jsonld
@@ -1,10 +1,7 @@
 {
-    "@context": [
-        "https://w3id.org/ro/crate/1.1/context",
-        {
-            "education": "https://w3id.org/ro/terms/criminalcharacters#education",
-            "interests": "https://w3id.org/ro/terms/criminalcharacters#interests",
-            "Person": "https://w3id.org/ro/terms/criminalcharacters#Person"
-        }
-    ]
+    "@context": {
+        "education": "https://w3id.org/ro/terms/criminalcharacters#education",
+        "interests": "https://w3id.org/ro/terms/criminalcharacters#interests",
+        "Person": "https://w3id.org/ro/terms/criminalcharacters#Person"
+    }
 }
diff --git a/example/context.json b/example/context.json
@@ -1,9 +1,6 @@
 {
-    "@context": [
-        "https://w3id.org/ro/crate/1.1/context",
-        {
-            "Book": "https://w3id.org/ro/terms/example#Book",
-            "title": "https://w3id.org/ro/terms/example#title"
-        }
-    ]
+    "@context": {
+        "Book": "https://w3id.org/ro/terms/example#Book",
+        "title": "https://w3id.org/ro/terms/example#title"
+    }
 }
diff --git a/example/context.jsonld b/example/context.jsonld
@@ -1,9 +1,6 @@
 {
-    "@context": [
-        "https://w3id.org/ro/crate/1.1/context",
-        {
-            "Book": "https://w3id.org/ro/terms/example#Book",
-            "title": "https://w3id.org/ro/terms/example#title"
-        }
-    ]
+    "@context": {
+        "Book": "https://w3id.org/ro/terms/example#Book",
+        "title": "https://w3id.org/ro/terms/example#title"
+    }
 }
diff --git a/gen_context.py b/gen_context.py
@@ -9,13 +9,11 @@
 from pathlib import Path
 
 
-RO_CRATE_VERSION = "1.1"
 RO_TERMS_PREFIX = "https://w3id.org/ro/terms"
 VOCAB_FN = "vocabulary.csv"
 
 
-def build_context(namespace, vocab_path, ro_crate_version=RO_CRATE_VERSION):
-    ro_crate_context = f"https://w3id.org/ro/crate/{ro_crate_version}/context"
+def build_context(namespace, vocab_path):
     add_terms = {}
     with open(vocab_path, newline="") as f:
         reader = csv.DictReader(f)
@@ -26,26 +24,26 @@ def build_context(namespace, vocab_path, ro_crate_version=RO_CRATE_VERSION):
             if not k:
                 continue # empty line!
             add_terms[k] = f"{RO_TERMS_PREFIX}/{namespace}#{k}"
-    return {"@context": [ro_crate_context, add_terms]}
+    return {"@context": add_terms}
 
 
 def main(args):
     ns_dir = Path(args.ns_dir)
     vocab_path = ns_dir / VOCAB_FN
     if not vocab_path.is_file():
         raise RuntimeError(f"{vocab_path} not found")
-    context = build_context(ns_dir.name, vocab_path,
-                            ro_crate_version=args.ro_crate_version)
+    context = build_context(ns_dir.name, vocab_path)
     if not args.output:
-        args.output = ns_dir / "context.jsonld"
-    with open(args.output, "wt", encoding="utf8") as f:
-        json.dump(context, f, ensure_ascii=False, indent=4, sort_keys=False)
+        args.output = [ns_dir / f"context.{ext}" for ext in ("json", "jsonld")]
+    else:
+        args.output = [args.output]
+    for out_fn in args.output:
+        with open(out_fn, "wt", encoding="utf8") as f:
+            json.dump(context, f, ensure_ascii=False, indent=4, sort_keys=False)
 
 
 if __name__ == "__main__":
     parser = argparse.ArgumentParser(description=__doc__)
     parser.add_argument("ns_dir", metavar="NAMESPACE", help="namespace dir")
-    parser.add_argument("-v", "--ro-crate-version", metavar="string",
-                        default=RO_CRATE_VERSION, help="RO-Crate version")
     parser.add_argument('-o', '--output', metavar="FILE")
     main(parser.parse_args(sys.argv[1:]))
diff --git a/ods/context.json b/ods/context.json
@@ -1,16 +1,13 @@
 {
-    "@context": [
-        "https://w3id.org/ro/crate/1.1/context",
-        {
-            "Specimen": "https://w3id.org/ro/terms/ods#Specimen",
-            "SpecimenRecord": "https://w3id.org/ro/terms/ods#SpecimenRecord",
-            "authoritative": "https://w3id.org/ro/terms/ods#authoritative",
-            "modified": "https://w3id.org/ro/terms/ods#modified",
-            "midsLevel": "https://w3id.org/ro/terms/ods#midsLevel",
-            "physicalSpecimenId": "https://w3id.org/ro/terms/ods#physicalSpecimenId",
-            "institution": "https://w3id.org/ro/terms/ods#institution",
-            "materialType": "https://w3id.org/ro/terms/ods#materialType",
-            "name": "https://w3id.org/ro/terms/ods#name"
-        }
-    ]
+    "@context": {
+        "Specimen": "https://w3id.org/ro/terms/ods#Specimen",
+        "SpecimenRecord": "https://w3id.org/ro/terms/ods#SpecimenRecord",
+        "authoritative": "https://w3id.org/ro/terms/ods#authoritative",
+        "modified": "https://w3id.org/ro/terms/ods#modified",
+        "midsLevel": "https://w3id.org/ro/terms/ods#midsLevel",
+        "physicalSpecimenId": "https://w3id.org/ro/terms/ods#physicalSpecimenId",
+        "institution": "https://w3id.org/ro/terms/ods#institution",
+        "materialType": "https://w3id.org/ro/terms/ods#materialType",
+        "name": "https://w3id.org/ro/terms/ods#name"
+    }
 }
diff --git a/ods/context.jsonld b/ods/context.jsonld
@@ -1,16 +1,13 @@
 {
-    "@context": [
-        "https://w3id.org/ro/crate/1.1/context",
-        {
-            "Specimen": "https://w3id.org/ro/terms/ods#Specimen",
-            "SpecimenRecord": "https://w3id.org/ro/terms/ods#SpecimenRecord",
-            "authoritative": "https://w3id.org/ro/terms/ods#authoritative",
-            "modified": "https://w3id.org/ro/terms/ods#modified",
-            "midsLevel": "https://w3id.org/ro/terms/ods#midsLevel",
-            "physicalSpecimenId": "https://w3id.org/ro/terms/ods#physicalSpecimenId",
-            "institution": "https://w3id.org/ro/terms/ods#institution",
-            "materialType": "https://w3id.org/ro/terms/ods#materialType",
-            "name": "https://w3id.org/ro/terms/ods#name"
-        }
-    ]
+    "@context": {
+        "Specimen": "https://w3id.org/ro/terms/ods#Specimen",
+        "SpecimenRecord": "https://w3id.org/ro/terms/ods#SpecimenRecord",
+        "authoritative": "https://w3id.org/ro/terms/ods#authoritative",
+        "modified": "https://w3id.org/ro/terms/ods#modified",
+        "midsLevel": "https://w3id.org/ro/terms/ods#midsLevel",
+        "physicalSpecimenId": "https://w3id.org/ro/terms/ods#physicalSpecimenId",
+        "institution": "https://w3id.org/ro/terms/ods#institution",
+        "materialType": "https://w3id.org/ro/terms/ods#materialType",
+        "name": "https://w3id.org/ro/terms/ods#name"
+    }
 }