arguments on single line #678
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name: GitHub Branch CI | |
on: | |
push: | |
branches-ignore: | |
- main | |
workflow_dispatch: | |
inputs: | |
git-ref: | |
description: Git Hash (Optional) | |
required: false | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
cancel-in-progress: true | |
defaults: | |
run: | |
shell: bash -l {0} | |
env: | |
PYTHONWARNINGS: ignore::UserWarning | |
PYTHON_CORE_PKGS: wheel | |
PYPI_ONLY: z3-solver | |
PYPY_EXCLUDE: scipy numdifftools seaborn statsmodels | |
CACHE_VER: v221013.1 | |
NEOS_EMAIL: [email protected] | |
SRC_REF: ${{ github.head_ref || github.ref }} | |
jobs: | |
lint: | |
name: lint/style-and-typos | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout Pyomo source | |
uses: actions/checkout@v4 | |
- name: Set up Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: '3.10' | |
- name: Black Formatting Check | |
run: | | |
pip install black | |
black . -S -C --check --diff --exclude examples/pyomobook/python-ch/BadIndent.py | |
- name: Spell Check | |
uses: crate-ci/typos@master | |
with: | |
config: ./.github/workflows/typos.toml | |
build: | |
name: ${{ matrix.TARGET }}/${{ matrix.python }}${{ matrix.other }} | |
runs-on: ${{ matrix.os }} | |
timeout-minutes: 120 | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu-latest] | |
python: ['3.12'] | |
other: [""] | |
category: [""] | |
include: | |
- os: ubuntu-latest | |
python: '3.12' | |
TARGET: linux | |
PYENV: pip | |
- os: macos-13 | |
python: '3.10' | |
TARGET: osx | |
PYENV: pip | |
- os: windows-latest | |
python: 3.9 | |
TARGET: win | |
PYENV: conda | |
PACKAGES: glpk pytest-qt filelock | |
- os: ubuntu-latest | |
python: '3.11' | |
other: /conda | |
skip_doctest: 1 | |
TARGET: linux | |
PYENV: conda | |
PACKAGES: pytest-qt | |
- os: ubuntu-latest | |
python: '3.10' | |
other: /mpi | |
mpi: 3 | |
skip_doctest: 1 | |
TARGET: linux | |
PYENV: conda | |
PACKAGES: mpi4py | |
- os: ubuntu-latest | |
python: '3.10' | |
other: /cython | |
setup_options: --with-cython | |
skip_doctest: 1 | |
TARGET: linux | |
PYENV: pip | |
PACKAGES: cython | |
- os: windows-latest | |
python: 3.8 | |
other: /pip | |
skip_doctest: 1 | |
TARGET: win | |
PYENV: pip | |
steps: | |
- name: Checkout Pyomo source | |
uses: actions/checkout@v4 | |
- name: Configure job parameters | |
run: | | |
JOB="${{matrix.TARGET}}/${{matrix.python}}${{matrix.other}}" | |
echo "GHA_JOBNAME=$JOB" | sed 's|/|_|g' >> $GITHUB_ENV | |
if test -z "${{matrix.other}}"; then | |
echo "GHA_JOBGROUP=${{matrix.TARGET}}" >> $GITHUB_ENV | |
else | |
echo "GHA_JOBGROUP=other" >> $GITHUB_ENV | |
fi | |
# Note: pandas 1.0.3 causes gams 29.1.0 import to fail in python 3.8 | |
EXTRAS=tests | |
if test -z "${{matrix.slim}}"; then | |
EXTRAS="$EXTRAS,docs,optional" | |
fi | |
echo "EXTRAS=$EXTRAS" >> $GITHUB_ENV | |
PYTHON_PACKAGES="${{matrix.PACKAGES}}" | |
echo "PYTHON_PACKAGES=$PYTHON_PACKAGES" \ | |
| tr '\n' ' ' | sed 's/ \+/ /g' >> $GITHUB_ENV | |
#- name: Pip package cache | |
# uses: actions/cache@v4 | |
# if: matrix.PYENV == 'pip' | |
# id: pip-cache | |
# with: | |
# path: cache/pip | |
# key: pip-${{env.CACHE_VER}}.0-${{runner.os}}-${{matrix.python}} | |
#- name: OS package cache | |
# uses: actions/cache@v4 | |
# if: matrix.TARGET != 'osx' | |
# id: os-cache | |
# with: | |
# path: cache/os | |
# key: pkg-${{env.CACHE_VER}}.0-${{runner.os}} | |
- name: TPL package download cache | |
uses: actions/cache@v4 | |
if: ${{ ! matrix.slim }} | |
id: download-cache | |
with: | |
path: cache/download | |
key: download-${{env.CACHE_VER}}.0-${{runner.os}} | |
- name: Configure curl | |
run: | | |
CURLRC="$(cat <<EOF | |
retry = 0 | |
max-time = 30 | |
EOF | |
)" | |
echo "$CURLRC" > ${GITHUB_WORKSPACE}/.curlrc | |
echo "$CURLRC" > ${GITHUB_WORKSPACE}/_curlrc | |
echo "CURL_HOME=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
- name: Update OSX | |
if: matrix.TARGET == 'osx' | |
run: | | |
mkdir -p ${GITHUB_WORKSPACE}/cache/os | |
export HOMEBREW_CACHE=${GITHUB_WORKSPACE}/cache/os | |
# Be cautious running brew update: it can break | |
# setup-python on OSX | |
# brew update | |
# | |
# Notes: | |
# - install glpk | |
# - pyodbc needs: gcc pkg-config unixodbc freetds | |
for pkg in bash pkg-config unixodbc freetds glpk; do | |
brew list $pkg || brew install $pkg | |
done | |
- name: Update Linux | |
if: matrix.TARGET == 'linux' | |
run: | | |
mkdir -p ${GITHUB_WORKSPACE}/cache/os | |
# Notes: | |
# - install glpk | |
# - ipopt needs: libopenblas-dev gfortran liblapack-dev | |
sudo apt-get -o Dir::Cache=${GITHUB_WORKSPACE}/cache/os \ | |
install libopenblas-dev gfortran liblapack-dev glpk-utils | |
sudo chmod -R 777 ${GITHUB_WORKSPACE}/cache/os | |
- name: Update Windows | |
if: matrix.TARGET == 'win' | |
run: | | |
echo "SETUPTOOLS_USE_DISTUTILS=local" >> $GITHUB_ENV | |
- name: Set up Python ${{ matrix.python }} | |
if: matrix.PYENV == 'pip' | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python }} | |
- name: Set up Miniconda Python ${{ matrix.python }} | |
if: matrix.PYENV == 'conda' | |
uses: conda-incubator/setup-miniconda@v3 | |
with: | |
auto-update-conda: false | |
python-version: ${{ matrix.python }} | |
# This is necessary for qt (UI) tests; the package utilized here does not | |
# have support for OSX. | |
- name: Set up UI testing infrastructure | |
if: ${{ matrix.TARGET != 'osx' }} | |
uses: pyvista/setup-headless-display-action@v2 | |
with: | |
qt: true | |
pyvista: false | |
# GitHub actions is very fragile when it comes to setting up various | |
# Python interpreters, expecially the setup-miniconda interface. | |
# Per the setup-miniconda documentation, it is important to always | |
# invoke bash as a login shell ('shell: bash -l {0}') so that the | |
# conda environment is properly activated. However, running within | |
# a login shell appears to foul up the link to python from | |
# setup-python. Further, we have anecdotal evidence that | |
# subprocesses invoked through $(python -c ...) and `python -c ...` | |
# will not pick up the python activated by setup-python on OSX. | |
# | |
# Our solution is to define a PYTHON_EXE environment variable that | |
# can be explicitly called within subprocess calls to reach the | |
# correct interpreter. Note that we must explicitly run in a *non* | |
# login shell to set up the environment variable for the | |
# setup-python environments. | |
- name: Install Python Packages (pip) | |
if: matrix.PYENV == 'pip' | |
shell: bash # DO NOT REMOVE: see note above | |
run: | | |
python -c 'import sys;print(sys.executable)' | |
python -m pip install --cache-dir cache/pip --upgrade pip | |
python -m pip install --cache-dir cache/pip setuptools | |
PYOMO_DEPENDENCIES=`python setup.py dependencies \ | |
--extras "$EXTRAS" | tail -1` | |
PACKAGES="${PYTHON_CORE_PKGS} ${PYTHON_PACKAGES} ${PYOMO_DEPENDENCIES} " | |
if [[ ${{matrix.python}} == pypy* ]]; then | |
EXCLUDE="$PYPY_EXCLUDE $EXCLUDE" | |
fi | |
EXCLUDE=`echo "$EXCLUDE" | xargs` | |
if test -n "$EXCLUDE"; then | |
for WORD in $EXCLUDE; do | |
PACKAGES=${PACKAGES//$WORD / } | |
done | |
fi | |
python -m pip install --cache-dir cache/pip ${PACKAGES} | |
python -m pip install --cache-dir cache/pip pymysql || \ | |
python -m pip install --cache-dir cache/pip pymysql | |
if test -z "${{matrix.slim}}"; then | |
python -m pip install --cache-dir cache/pip cplex docplex \ | |
|| echo "WARNING: CPLEX Community Edition is not available" | |
python -m pip install --cache-dir cache/pip \ | |
-i https://pypi.gurobi.com gurobipy==10.0.3 \ | |
|| echo "WARNING: Gurobi is not available" | |
python -m pip install --cache-dir cache/pip xpress \ | |
|| echo "WARNING: Xpress Community Edition is not available" | |
if [[ ${{matrix.python}} == pypy* ]]; then | |
echo "skipping wntr for pypy" | |
else | |
python -m pip install wntr \ | |
|| echo "WARNING: WNTR is not available" | |
fi | |
fi | |
python -c 'import sys; print("PYTHON_EXE=%s" \ | |
% (sys.executable,))' >> $GITHUB_ENV | |
echo "" | |
echo "Final pip environment:" | |
python -m pip list | sed 's/^/ /' | |
- name: Install Python packages (conda) | |
if: matrix.PYENV == 'conda' | |
run: | | |
# Set up environment | |
conda config --set always_yes yes | |
conda config --set auto_update_conda false | |
conda config --remove channels defaults | |
conda config --append channels nodefaults | |
conda config --append channels conda-forge | |
# Try to install mamba | |
conda install --update-deps -q -y -n base conda-libmamba-solver \ | |
|| MAMBA_FAILED=1 | |
if test -z "$MAMBA_FAILED"; then | |
echo "*** Activating the mamba environment solver ***" | |
conda config --set solver libmamba | |
fi | |
# Add the rest of the channels | |
conda config --append channels gurobi | |
conda config --append channels ibmdecisionoptimization | |
conda config --append channels fico-xpress | |
# Print environment info | |
echo "*** CONDA environment: ***" | |
conda info | |
conda config --show-sources | |
conda config --show channels | |
conda list --show-channel-urls | |
which python | |
python --version | |
# Note: some pypi packages are not available through conda | |
PYOMO_DEPENDENCIES=`python setup.py dependencies \ | |
--extras "$EXTRAS" | tail -1` | |
PACKAGES="${PYTHON_CORE_PKGS} ${PYTHON_PACKAGES} ${PYOMO_DEPENDENCIES} " | |
if [[ ${{matrix.python}} == pypy* ]]; then | |
EXCLUDE="$PYPY_EXCLUDE $EXCLUDE" | |
fi | |
# HACK: Remove problem packages on conda+Linux | |
if test "${{matrix.TARGET}}" == linux; then | |
EXCLUDE="casadi numdifftools $EXCLUDE" | |
fi | |
EXCLUDE=`echo "$EXCLUDE" | xargs` | |
if test -n "$EXCLUDE"; then | |
for WORD in $EXCLUDE; do | |
PACKAGES=${PACKAGES//$WORD / } | |
done | |
fi | |
for PKG in $PACKAGES; do | |
if [[ " $PYPI_ONLY " == *" $PKG "* ]]; then | |
PYPI_DEPENDENCIES="$PYPI_DEPENDENCIES $PKG" | |
else | |
CONDA_DEPENDENCIES="$CONDA_DEPENDENCIES $PKG" | |
fi | |
done | |
echo "" | |
echo "*** Install Pyomo dependencies ***" | |
# Note: this will fail the build if any installation fails (or | |
# possibly if it outputs messages to stderr) | |
conda install --update-deps -y $CONDA_DEPENDENCIES | |
if test -z "${{matrix.slim}}"; then | |
PYVER=$(echo "py${{matrix.python}}" | sed 's/\.//g') | |
echo "Installing for $PYVER" | |
for PKG in 'cplex>=12.10' docplex 'gurobi=10.0.3' xpress cyipopt pymumps scip; do | |
echo "" | |
echo "*** Install $PKG ***" | |
# conda can literally take an hour to determine that a | |
# package is not available. Perform a quick search to see | |
# if the package is available for this interpreter before | |
# attempting an install. | |
# NOTE: conda search will attempt approximate matches. | |
_PKGLIST=$(conda search -f "$PKG") || echo "Package $PKG not found" | |
echo "$_PKGLIST" | |
_BASE=$(echo "$PKG" | sed 's/[=<>].*//') | |
_BUILDS=$(echo "$_PKGLIST" | grep "^$_BASE " \ | |
| sed -r 's/\s+/ /g' | cut -d\ -f3) || echo "" | |
if test -n "$_BUILDS"; then | |
_ISPY=$(echo "$_BUILDS" | grep "^py") \ | |
|| echo "INFO: No python build detected." | |
_PYOK=$(echo "$_BUILDS" | grep -E "^($PYVER|pyh)") \ | |
|| echo "INFO: No python build matching $PYVER detected." | |
if test -z "$_ISPY" -o -n "$_PYOK"; then | |
echo "" | |
echo "... INSTALLING $PKG" | |
conda install -y "$PKG" || _BUILDS="" | |
fi | |
fi | |
if test -z "$_BUILDS"; then | |
echo "WARNING: $PKG is not available" | |
fi | |
done | |
fi | |
# Re-try Pyomo (optional) dependencies with pip | |
if test -n "$PYPI_DEPENDENCIES"; then | |
python -m pip install --cache-dir cache/pip $PYPI_DEPENDENCIES | |
fi | |
# remember this python interpreter | |
python -c 'import sys; print("PYTHON_EXE=%s" \ | |
% (sys.executable,))' >> $GITHUB_ENV | |
# | |
# conda activate puts itself first in the PATH, which overrides | |
# any paths we add through GITHUB_PATH. We will update .profile | |
# to move the local runner paths back to the front (before conda). | |
for profile in $HOME/.profile $HOME/.bash_profile; do | |
if test ! -e $profile; then | |
continue | |
fi | |
echo '' >> $profile | |
echo 'export PATH=`echo "$PATH" \ | |
| tr ":" "\\n" | grep runner | tr "\n" ":"`:`echo "$PATH" \ | |
| tr ":" "\\n" | grep -v runner | tr "\n" ":"`' >> $profile | |
done | |
echo "" | |
echo "Final conda environment:" | |
conda list | sed 's/^/ /' | |
- name: Setup TPL package directories | |
run: | | |
TPL_DIR="${GITHUB_WORKSPACE}/cache/tpl" | |
mkdir -p "$TPL_DIR" | |
DOWNLOAD_DIR="${GITHUB_WORKSPACE}/cache/download" | |
mkdir -p "$DOWNLOAD_DIR" | |
echo "TPL_DIR=$TPL_DIR" >> $GITHUB_ENV | |
echo "DOWNLOAD_DIR=$DOWNLOAD_DIR" >> $GITHUB_ENV | |
- name: Install Ipopt | |
if: ${{ ! matrix.slim }} | |
run: | | |
IPOPT_DIR=$TPL_DIR/ipopt | |
echo "$IPOPT_DIR" >> $GITHUB_PATH | |
echo "LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$IPOPT_DIR" >> $GITHUB_ENV | |
mkdir -p $IPOPT_DIR | |
IPOPT_TAR=${DOWNLOAD_DIR}/ipopt.tar.gz | |
if test ! -e $IPOPT_TAR; then | |
echo "...downloading Ipopt" | |
if test "${{matrix.TARGET}}" == osx; then | |
echo "IDAES Ipopt not available on OSX" | |
exit 0 | |
fi | |
URL=https://github.com/IDAES/idaes-ext | |
RELEASE=$(curl --max-time 150 --retry 8 \ | |
-L -s -H 'Accept: application/json' ${URL}/releases/latest) | |
VER=$(echo $RELEASE | sed -e 's/.*"tag_name":"\([^"]*\)".*/\1/') | |
URL=${URL}/releases/download/$VER | |
if test "${{matrix.TARGET}}" == linux; then | |
curl --max-time 150 --retry 8 \ | |
-L $URL/idaes-solvers-ubuntu2004-x86_64.tar.gz \ | |
> $IPOPT_TAR | |
else | |
curl --max-time 150 --retry 8 \ | |
-L $URL/idaes-solvers-windows-x86_64.tar.gz \ | |
$URL/idaes-lib-windows-x86_64.tar.gz > $IPOPT_TAR | |
fi | |
fi | |
cd $IPOPT_DIR | |
tar -xzi < $IPOPT_TAR | |
echo "" | |
echo "$IPOPT_DIR" | |
ls -l $IPOPT_DIR | |
- name: Install GAMS | |
if: ${{ ! matrix.slim }} | |
# We install using Powershell because the GAMS installer hangs | |
# when launched from bash on Windows | |
shell: pwsh | |
run: | | |
$GAMS_DIR = "${env:TPL_DIR}/gams" | |
echo "$GAMS_DIR" | ` | |
Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append | |
echo "LD_LIBRARY_PATH=${env:LD_LIBRARY_PATH}:$GAMS_DIR" ` | |
Out-File -FilePath $env:GITHUB_ENV -Encoding utf8 -Append | |
echo "DYLD_LIBRARY_PATH=${env:DYLD_LIBRARY_PATH}:$GAMS_DIR" ` | |
Out-File -FilePath $env:GITHUB_ENV -Encoding utf8 -Append | |
$INSTALLER = "${env:DOWNLOAD_DIR}/gams_install.exe" | |
# We are pinning to 29.1.0 because a license is required for | |
# versions after this in order to run in demo mode. | |
$URL = "https://d37drm4t2jghv5.cloudfront.net/distributions/29.1.0" | |
if ( "${{matrix.TARGET}}" -eq "win" ) { | |
$URL = "$URL/windows/windows_x64_64.exe" | |
} elseif ( "${{matrix.TARGET}}" -eq "osx" ) { | |
$URL = "$URL/macosx/osx_x64_64_sfx.exe" | |
} else { | |
$URL = "$URL/linux/linux_x64_64_sfx.exe" | |
} | |
if (-not (Test-Path "$INSTALLER" -PathType Leaf)) { | |
echo "...downloading GAMS" | |
Invoke-WebRequest -Uri "$URL" -OutFile "$INSTALLER" ` | |
-RetryIntervalSec 30 -MaximumRetryCount 8 -TimeoutSec 150 | |
} | |
echo "...installing GAMS" | |
if ( "${{matrix.TARGET}}" -eq "win" ) { | |
Start-Process -FilePath "$INSTALLER" -ArgumentList ` | |
"/SP- /NORESTART /VERYSILENT /DIR=$GAMS_DIR /NOICONS" ` | |
-Wait | |
} else { | |
chmod 777 $INSTALLER | |
Start-Process -FilePath "$INSTALLER" -ArgumentList ` | |
"-q -d $GAMS_DIR" -Wait | |
mv $GAMS_DIR/*/* $GAMS_DIR/. | |
} | |
echo "" | |
echo "$GAMS_DIR" | |
ls -l $GAMS_DIR | |
- name: Install GAMS Python bindings | |
if: ${{ ! matrix.slim }} | |
run: | | |
GAMS_DIR="${env:TPL_DIR}/gams" | |
py_ver=$($PYTHON_EXE -c 'import sys;v="_%s%s" % sys.version_info[:2] \ | |
;print(v if v != "_27" else "")') | |
if test -e $GAMS_DIR/apifiles/Python/api$py_ver; then | |
echo "Installing GAMS Python bindings" | |
pushd $GAMS_DIR/apifiles/Python/api$py_ver | |
$PYTHON_EXE setup.py install | |
popd | |
fi | |
- name: Install BARON | |
if: ${{ ! matrix.slim }} | |
shell: pwsh | |
run: | | |
$BARON_DIR = "${env:TPL_DIR}/baron" | |
echo "$BARON_DIR" | ` | |
Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append | |
$URL = "https://www.minlp.com/downloads/xecs/baron/current/" | |
if ( "${{matrix.TARGET}}" -eq "win" ) { | |
$INSTALLER = "${env:DOWNLOAD_DIR}/baron_install.exe" | |
$URL += "baron-win64.exe" | |
} elseif ( "${{matrix.TARGET}}" -eq "osx" ) { | |
$INSTALLER = "${env:DOWNLOAD_DIR}/baron_install.zip" | |
$URL += "baron-osx64.zip" | |
} else { | |
$INSTALLER = "${env:DOWNLOAD_DIR}/baron_install.zip" | |
$URL += "baron-lin64.zip" | |
} | |
if (-not (Test-Path "$INSTALLER" -PathType Leaf)) { | |
echo "...downloading BARON ($URL)" | |
Invoke-WebRequest -Uri "$URL" -OutFile "$INSTALLER" ` | |
-RetryIntervalSec 30 -MaximumRetryCount 8 -TimeoutSec 150 | |
} | |
echo "...installing BARON" | |
if ( "${{matrix.TARGET}}" -eq "win" ) { | |
Start-Process -FilePath "$INSTALLER" -ArgumentList ` | |
"/SP- /NORESTART /VERYSILENT /DIR=$BARON_DIR /NOICONS" ` | |
-Wait | |
} else { | |
unzip -q $INSTALLER | |
mv baron-* $BARON_DIR | |
} | |
echo "" | |
echo "$BARON_DIR" | |
ls -l $BARON_DIR | |
- name: Install GJH_ASL_JSON | |
if: ${{ ! matrix.slim && matrix.TARGET != 'win' }} | |
run: | | |
GJH_DIR="$TPL_DIR/gjh" | |
echo "${GJH_DIR}" >> $GITHUB_PATH | |
INSTALL_DIR="${DOWNLOAD_DIR}/gjh" | |
if test ! -e "$INSTALL_DIR/bin"; then | |
mkdir -p "$INSTALL_DIR" | |
INSTALLER="$INSTALL_DIR/gjh_asl_json.zip" | |
URL="https://codeload.github.com/ghackebeil/gjh_asl_json/zip/master" | |
curl --max-time 150 --retry 8 -L $URL > $INSTALLER | |
cd $INSTALL_DIR | |
unzip -q $INSTALLER | |
cd gjh_asl_json-master/Thirdparty | |
./get.ASL | |
cd .. | |
make | |
mv bin "$INSTALL_DIR/bin" | |
fi | |
cp -rp "$INSTALL_DIR/bin" "$GJH_DIR" | |
echo "" | |
echo "$GJH_DIR" | |
ls -l $GJH_DIR | |
- name: Install Pyomo | |
run: | | |
echo "" | |
echo "Clone Pyomo-model-libraries..." | |
URL=https://github.com/Pyomo/pyomo-model-libraries.git | |
git clone -b ${SRC_REF##*/} $URL || git clone -b main $URL | |
echo "" | |
echo "Install Pyomo..." | |
echo "" | |
$PYTHON_EXE setup.py develop ${{matrix.setup_options}} | |
echo "" | |
echo "Set custom PYOMO_CONFIG_DIR" | |
echo "" | |
echo "PYOMO_CONFIG_DIR=${GITHUB_WORKSPACE}/config" >> $GITHUB_ENV | |
# this has to be done after Pyomo is installed because highspy | |
# depends on pyomo's find_library function | |
- name: Install HiGHS | |
if: ${{ ! matrix.slim }} | |
shell: bash | |
run: | | |
$PYTHON_EXE -m pip install --cache-dir cache/pip highspy \ | |
|| echo "WARNING: highspy is not available" | |
- name: Set up coverage tracking | |
run: | | |
if test "${{matrix.TARGET}}" == win; then | |
COVERAGE_BASE=${GITHUB_WORKSPACE}\\.cover | |
else | |
COVERAGE_BASE=${GITHUB_WORKSPACE}/.cover | |
fi | |
COVERAGE_RC=${COVERAGE_BASE}_rc | |
echo "COVERAGE_RCFILE=$COVERAGE_RC" >> $GITHUB_ENV | |
echo "COVERAGE_PROCESS_START=$COVERAGE_RC" >> $GITHUB_ENV | |
cp ${GITHUB_WORKSPACE}/.coveragerc ${COVERAGE_RC} | |
echo "data_file=${COVERAGE_BASE}age" >> ${COVERAGE_RC} | |
SITE_PACKAGES=$($PYTHON_EXE -c \ | |
"import sysconfig; print(sysconfig.get_path('purelib'))") | |
echo "Python site-packages: $SITE_PACKAGES" | |
echo 'import coverage; coverage.process_startup()' \ | |
> ${SITE_PACKAGES}/run_coverage_at_startup.pth | |
- name: Download and install extensions | |
if: ${{ ! matrix.slim }} | |
run: | | |
echo "" | |
echo "Pyomo download-extensions" | |
echo "" | |
pyomo download-extensions || exit 1 | |
echo "" | |
echo "Pyomo build-extensions" | |
echo "" | |
pyomo build-extensions --parallel 2 | |
- name: Report pyomo plugin information | |
run: | | |
echo "$PATH" | |
pyomo help --solvers || exit 1 | |
pyomo help --transformations || exit 1 | |
pyomo help --writers || exit 1 | |
- name: Run Pyomo tests | |
if: matrix.mpi == 0 | |
run: | | |
$PYTHON_EXE -m pytest -v \ | |
-W ignore::Warning ${{matrix.category}} \ | |
pyomo `pwd`/pyomo-model-libraries \ | |
`pwd`/examples `pwd`/doc --junitxml="TEST-pyomo.xml" | |
- name: Run Pyomo MPI tests | |
if: matrix.mpi != 0 | |
run: | | |
# Manually invoke the DAT parser so that parse_table_datacmds.py | |
# is fully generated by a single process before invoking MPI | |
$PYTHON_EXE -c "from pyomo.dataportal.parse_datacmds import \ | |
parse_data_commands; parse_data_commands(data='')" | |
# Note: if we are testing with openmpi, add '--oversubscribe' | |
mpirun -np ${{matrix.mpi}} -oversubscribe pytest -v \ | |
--junit-xml=TEST-pyomo-mpi.xml \ | |
-m "mpi" -W ignore::Warning \ | |
pyomo `pwd`/pyomo-model-libraries | |
- name: Run documentation tests | |
if: matrix.skip_doctest == 0 | |
run: | | |
make -C doc/OnlineDocs doctest -d | |
- name: Process code coverage report | |
run: | | |
coverage combine | |
coverage report -i | |
coverage xml -i | |
- name: Record build artifacts | |
uses: actions/upload-artifact@v4 | |
with: | |
name: ${{github.job}}_${{env.GHA_JOBGROUP}}-${{env.GHA_JOBNAME}} | |
path: | | |
.coverage | |
coverage.xml | |
# In general, do not record test results as artifacts to | |
# manage total artifact storage | |
# TEST-*.xml | |
bare-python-env: | |
name: linux/3.8/bare-env | |
runs-on: ubuntu-latest | |
timeout-minutes: 10 | |
steps: | |
- name: Checkout Pyomo source | |
uses: actions/checkout@v4 | |
- name: Set up Python 3.8 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.8 | |
- name: Install Pyomo | |
run: | | |
echo "" | |
echo "Install Pyomo..." | |
echo "" | |
python setup.py develop | |
echo "" | |
echo "Set custom PYOMO_CONFIG_DIR" | |
echo "" | |
echo "PYOMO_CONFIG_DIR=${GITHUB_WORKSPACE}/config" >> $GITHUB_ENV | |
- name: Report pyomo plugin information | |
run: | | |
echo "$PATH" | |
pyomo help --solvers || exit 1 | |
pyomo help --transformations || exit 1 | |
pyomo help --writers || exit 1 | |
- name: Run Pyomo standalone test | |
run: | | |
echo "" | |
echo "Running standalone Pyomo test" | |
echo "" | |
python `pwd`/pyomo/environ/tests/standalone_minimal_pyomo_driver.py \ | |
|| exit 1 | |
cover: | |
name: process-coverage-${{ matrix.TARGET }} | |
needs: build | |
if: ${{ false }} # turn off for branches | |
runs-on: ${{ matrix.os }} | |
timeout-minutes: 10 | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu-latest, macos-13, windows-latest] | |
include: | |
- os: ubuntu-latest | |
TARGET: linux | |
- os: macos-13 | |
TARGET: osx | |
- os: windows-latest | |
TARGET: win | |
steps: | |
- name: Checkout Pyomo source | |
uses: actions/checkout@v4 | |
# We need the source for .codecov.yml and running "coverage xml" | |
#- name: Pip package cache | |
# uses: actions/cache@v4 | |
# id: pip-cache | |
# with: | |
# path: cache/pip | |
# key: pip-${{env.CACHE_VER}}.0-${{runner.os}}-3.8 | |
- name: Download build artifacts | |
uses: actions/download-artifact@v4 | |
with: | |
path: artifacts | |
- name: Set up Python 3.8 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.8 | |
- name: Install Python Packages (pip) | |
shell: bash # DO NOT REMOVE: see note above | |
run: | | |
python -c 'import sys;print(sys.executable)' | |
python -m pip install --cache-dir cache/pip --upgrade pip | |
PYOMO_DEPENDENCIES=`python setup.py dependencies \ | |
--extras "tests" | tail -1` | |
python -m pip install --cache-dir cache/pip \ | |
${PYTHON_CORE_PKGS} ${PYOMO_DEPENDENCIES} | |
python -c 'import sys; print("PYTHON_EXE=%s" \ | |
% (sys.executable,))' >> $GITHUB_ENV | |
- name: Install Pyomo | |
run: | | |
echo "" | |
echo "Clone Pyomo-model-libraries..." | |
git clone https://github.com/Pyomo/pyomo-model-libraries.git | |
echo "" | |
echo "Install Pyomo..." | |
echo "" | |
$PYTHON_EXE setup.py develop ${{matrix.setup_options}} | |
echo "" | |
echo "Set custom PYOMO_CONFIG_DIR" | |
echo "" | |
echo "PYOMO_CONFIG_DIR=${GITHUB_WORKSPACE}/config" >> $GITHUB_ENV | |
- name: Generate parse_table_datacmds | |
run: | | |
# Manually invoke the DAT parser so that parse_table_datacmds.py | |
# is generated before running "coverage xml" | |
$PYTHON_EXE -c "from pyomo.dataportal.parse_datacmds import \ | |
parse_data_commands; parse_data_commands(data='')" | |
- name: Update codecov uploader | |
run: | | |
set +e | |
CODECOV="${GITHUB_WORKSPACE}/codecov.sh" | |
echo "CODECOV=$CODECOV" >> $GITHUB_ENV | |
for i in `seq 3`; do | |
echo "Downloading current codecov script (attempt ${i})" | |
curl -L https://codecov.io/bash -o $CODECOV | |
if test $? == 0; then | |
break | |
fi | |
DELAY=$(( RANDOM % 30 + 30)) | |
echo "Pausing $DELAY seconds before re-attempting download" | |
sleep $DELAY | |
done | |
if test ! -e $CODECOV; then | |
echo "Failed to download codecov.sh" | |
exit 1 | |
fi | |
- name: Combine coverage reports | |
if: github.repository_owner == 'Pyomo' || github.ref != 'refs/heads/main' | |
run: | | |
set +e | |
if [ "$GITHUB_EVENT_NAME" == "pull_request" ]; then | |
SHA=$(jq --raw-output .pull_request.head.sha "$GITHUB_EVENT_PATH") | |
else | |
SHA=$GITHUB_SHA | |
fi | |
for ARTIFACT in artifacts/*_*${{matrix.TARGET}}_*; do | |
NAME=`echo $ARTIFACT | cut -d/ -f2` | |
cp -v $ARTIFACT/.coverage .coverage-$NAME | |
done | |
rm -vf .coverage coverage.xml | |
echo "Build: ${{ matrix.TARGET }}/other" | |
echo "" | |
FILES=.coverage-*_other-* | |
coverage combine --debug=dataio $FILES | |
if test ! -e .coverage; then | |
echo "No coverage to upload." | |
else | |
coverage xml || coverage xml -i | |
mv -v coverage.xml coverage-other.xml | |
fi | |
echo "" | |
echo "Build: ${{ matrix.TARGET }}" | |
echo "" | |
FILES=.coverage-*_${{matrix.TARGET}}-* | |
coverage combine --debug=dataio $FILES | |
rm -vf artifacts/*/*.xml | |
if test ! -e .coverage; then | |
echo "No coverage to upload." | |
else | |
coverage xml || coverage xml -i | |
fi | |
- name: Upload codecov reports | |
if: github.repository_owner == 'Pyomo' || github.ref != 'refs/heads/main' | |
uses: codecov/codecov-action@v4 | |
with: | |
files: coverage.xml | |
token: ${{ secrets.PYOMO_CODECOV_TOKEN }} | |
name: ${{ matrix.TARGET }} | |
flags: ${{ matrix.TARGET }} | |
fail_ci_if_error: true | |
- name: Upload other coverage reports | |
if: | | |
hashFiles('coverage-other.xml') != '' && | |
(github.repository_owner == 'Pyomo' || github.ref != 'refs/heads/main') | |
uses: codecov/codecov-action@v4 | |
with: | |
files: coverage-other.xml | |
token: ${{ secrets.PYOMO_CODECOV_TOKEN }} | |
name: ${{ matrix.TARGET }}/other | |
flags: ${{ matrix.TARGET }},other | |
fail_ci_if_error: true |