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Remove more cleanup steps
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milanmlft authored Aug 23, 2024
1 parent 667b711 commit ed59327
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Showing 3 changed files with 37 additions and 9 deletions.
24 changes: 24 additions & 0 deletions dev/test_db/dummy/measurement.csv
Original file line number Diff line number Diff line change
@@ -0,0 +1,24 @@
measurement_id,person_id,measurement_concept_id,measurement_date,measurement_datetime,measurement_time,measurement_type_concept_id,operator_concept_id,value_as_number,value_as_concept_id,unit_concept_id,range_low,range_high,provider_id,visit_occurrence_id,visit_detail_id,measurement_source_value,measurement_source_concept_id,unit_source_value,value_source_value
10000000,103,4354252,2021-06-01,2021-06-01T10:45:00Z,NA,32817,0,115,0,8876,NA,NA,NA,NA,NA,NA,NA,NA,NA
10000001,12,4354252,2020-08-25,2020-08-25T14:15:00Z,NA,32817,0,122,0,8876,NA,NA,NA,NA,NA,NA,NA,NA,NA
10000002,866,4354252,2021-11-14,2021-11-14T13:05:00Z,NA,32817,0,125,0,8876,NA,NA,NA,NA,NA,NA,NA,NA,NA
10000003,12,4354252,2019-08-23,2019-08-23T02:28:00Z,NA,32817,0,131,0,8876,NA,NA,NA,NA,NA,NA,NA,NA,NA
10000004,51,4354252,2021-02-11,2021-02-11T15:01:00Z,NA,32817,0,111,0,8876,NA,NA,NA,NA,NA,NA,NA,NA,NA
10000005,3028,4354252,2018-01-18,2018-01-18T12:14:00Z,NA,32817,0,138,0,8876,NA,NA,NA,NA,NA,NA,NA,NA,NA
10000006,7,4248525,2021-10-15,2021-10-15T10:20:00Z,NA,32817,0,169,0,8876,NA,NA,NA,NA,NA,NA,NA,NA,NA
10000007,553,4248525,2015-04-19,2015-04-19T16:47:00Z,NA,32817,0,131,0,8876,NA,NA,NA,NA,NA,NA,NA,NA,NA
10000008,1641,4248525,2019-10-11,2019-10-11T07:00:00Z,NA,32817,0,128,0,8876,NA,NA,NA,NA,NA,NA,NA,NA,NA
10000009,553,4248525,2020-06-26,2020-06-26T00:00:00Z,NA,32817,0,114,0,8876,NA,NA,NA,NA,NA,NA,NA,NA,NA
10000010,12,4248525,2019-05-01,2019-05-01T20:55:00Z,NA,32817,0,122,0,8876,NA,NA,NA,NA,NA,NA,NA,NA,NA
10000011,978,4353843,2002-03-03,2002-03-03T22:00:00Z,NA,32817,0,162,0,8876,NA,NA,NA,NA,NA,NA,NA,NA,NA
10000012,12,4353843,2021-09-18,2021-09-18T02:00:00Z,NA,32817,0,152,0,8876,NA,NA,NA,NA,NA,NA,NA,NA,NA
10000013,6459,4353843,2021-12-28,2021-12-28T02:00:00Z,NA,32817,0,118,0,8876,NA,NA,NA,NA,NA,NA,NA,NA,NA
10000014,995,4353843,2023-04-08,2023-04-08T08:00:00Z,NA,32817,0,99,0,8876,NA,NA,NA,NA,NA,NA,NA,NA,NA
10000015,110,4353843,2015-09-20,2015-09-20T07:00:00Z,NA,32817,0,117,0,8876,NA,NA,NA,NA,NA,NA,NA,NA,NA
10000016,8746,4353843,2021-10-01,2021-10-01T09:00:00Z,NA,32817,0,125,0,8876,NA,NA,NA,NA,NA,NA,NA,NA,NA
10000017,978,4108450,2001-06-15,2001-06-15T07:50:00Z,NA,32817,0,0.6666666666666666,0,8523,NA,NA,NA,NA,NA,NA,NA,NA,NA
10000018,8916,4108450,2019-09-13,2019-09-13T08:29:00Z,NA,32817,0,0.6666666666666666,0,8523,NA,NA,NA,NA,NA,NA,NA,NA,NA
10000019,51,3001079,2020-05-15,2020-05-15T22:44:00Z,NA,32817,0,NA,45878588,0,NA,NA,NA,NA,NA,NA,NA,NA,NA
10000020,909,3001079,2018-03-11,2018-03-11T13:30:00Z,NA,32817,0,NA,45878588,0,NA,NA,NA,NA,NA,NA,NA,NA,NA
10000021,553,4128111,2020-12-02,2020-12-02T00:00:00Z,NA,32817,0,NA,1635564,0,NA,NA,NA,NA,NA,NA,NA,NA,NA
10000022,7,4128111,2020-11-25,2020-11-25T00:00:00Z,NA,32817,0,NA,1633781,0,NA,NA,NA,NA,NA,NA,NA,NA,NA
13 changes: 13 additions & 0 deletions dev/test_db/dummy/observation.csv
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observation_id,person_id,observation_concept_id,observation_date,observation_datetime,observation_type_concept_id,value_as_number,value_as_string,value_as_concept_id,qualifier_concept_id,unit_concept_id,provider_id,visit_occurrence_id,visit_detail_id,observation_source_value,observation_source_concept_id,unit_source_value,qualifier_source_value
10000000,11,45766147,2022-06-24,2022-06-24T09:00:00Z,32817,NA,NA,4086518,NA,0,NA,NA,NA,NA,NA,NA,NA
10000001,59,4257036,2018-09-02,2018-09-02T09:19:00Z,32817,NA,NA,37208662,NA,0,NA,NA,NA,NA,NA,NA,NA
10000002,237,4257036,2014-11-19,2014-11-19T17:10:00Z,32817,NA,NA,37208662,NA,0,NA,NA,NA,NA,NA,NA,NA
10000003,299,4257036,2017-02-17,2017-02-17T11:14:00Z,32817,NA,NA,37208662,NA,0,NA,NA,NA,NA,NA,NA,NA
10000004,673,4216746,2011-03-22,2011-03-22T16:00:00Z,32817,8,NA,0,NA,44777590,NA,NA,NA,NA,NA,NA,NA
10000005,11,4353717,2022-12-05,2022-12-05T17:00:00Z,32817,10.6,NA,0,NA,8698,NA,NA,NA,NA,NA,NA,NA
10000006,1502,4353717,2021-05-13,2021-05-13T11:00:00Z,32817,16.8,NA,0,NA,8698,NA,NA,NA,NA,NA,NA,NA
10000007,986,4216746,2008-09-28,2008-09-28T20:00:00Z,32817,8,NA,0,NA,44777590,NA,NA,NA,NA,NA,NA,NA
10000008,299,4353717,2016-10-09,2016-10-09T01:00:00Z,32817,11,NA,0,NA,8698,NA,NA,NA,NA,NA,NA,NA
10000009,299,4353713,2018-01-12,2018-01-12T15:58:00Z,32817,5,NA,0,NA,44777590,NA,NA,NA,NA,NA,NA,NA
10000010,6288,4353713,2021-07-19,2021-07-19T15:14:00Z,32817,7,NA,0,NA,44777590,NA,NA,NA,NA,NA,NA,NA
10000011,3362,4353713,2019-02-08,2019-02-08T12:25:00Z,32817,5,NA,0,NA,44777590,NA,NA,NA,NA,NA,NA,NA
9 changes: 0 additions & 9 deletions dev/test_db/insert_dummy_tables.R
Original file line number Diff line number Diff line change
Expand Up @@ -45,12 +45,3 @@ CDMConnector::cdm_from_con(
cdm_name = name
)

# Clean up
DBI::dbDisconnect(con)
rm(write_table)
rm(con)
rm(dir)
rm(name)
rm(version)

detach("package:tidyverse", unload = TRUE)

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