delete resizeImage function that is imported from another R package

SFB-ELAINE · Jan 18, 2024 · fdd071b · fdd071b
1 parent 90042aa
commit fdd071b
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Showing 6 changed files with 7 additions and 78 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Type: Package
 Package: detectCilia
-Title: Detect and measure the lengths of primary cilia in microsopy images
-Version: 0.8.0
+Title: Detect and measure the lengths of primary cilia in microscopy images
+Version: 0.8.1
 Authors@R: 
     person("Kai", "Budde-Sagert", , "[email protected]", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0001-6836-9865"))

diff --git a/R/addNumberToImage.R b/R/addNumberToImage.R
@@ -88,7 +88,7 @@ addNumberToImage <- function(image = NULL,
     }
 
     # Resize image
-    digit_image <- resizeImage(digit_image, number_size_factor)
+    digit_image <- readCzi::resizeImage(digit_image, number_size_factor)
     digit_images[[i]] <- digit_image
 
     # Save dimensions of all digits

diff --git a/R/resizeImage.R b/R/resizeImage.R
diff --git a/inst/CITATION b/inst/CITATION
@@ -1,10 +1,11 @@
 citHeader("To cite the detectCilia package in publications, please use:")
 
 bibentry(bibtype = "Manual",
-  title = "{detectCilia}: Detecting the lengths of primary cilia",
+  title = "{detectCilia}: R package for detecting the lengths of primary cilia",
   author = person("Kai", "Budde-Sagert"),
   year = 2023,
-  note = "R package version 0.7.3",
+  note = "R package version 0.8.1",
+  doi = "10.5281/zenodo.10521546",
   url = "https://github.com/SFB-ELAINE/detectCilia"
   )
 

diff --git a/inst/testscript.R b/inst/testscript.R
@@ -36,7 +36,7 @@ if(! "czifile" %in% reticulate::py_list_packages()$package){
 }
 
 # Install the R package for reading czi images
-devtools::install_github("SFB-ELAINE/readCzi", upgrade = "ask")
+devtools::install_github("SFB-ELAINE/readCzi@v0.4.0")
 require(readCzi)
 
 # Install this R package for detecting cilia in microscopy images

diff --git a/man/resizeImage.Rd b/man/resizeImage.Rd