Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Added c14_lab_code.json (#1216) #1218

Merged
merged 1 commit into from
Jan 27, 2025
Merged

Added c14_lab_code.json (#1216) #1218

merged 1 commit into from
Jan 27, 2025

Conversation

aidaanva
Copy link
Member

C14 lab codes enums for the C14 extension

Pull Request

This PR is for a

For the following list(s):

  • ancientmetagenome-environmental (README)
  • ancientmetagenome-hostassociated (README)
  • ancientsinglegenome-hostassociated (README)

This is to close

PR Workflow

  1. Open this PR with sample metadata on the samples metadata sheet (:tada: you're already here!)
  2. Wait for checks for sample metdata to pass
  3. (If checks fail) make corrections, and push changes to this branch (no need to open a new PR!)
  4. (Once passed) comment on this PR @spaam-bot please autofill <table_name> <project_id> to get a half-filled template! (may take a minute or so to get the comment with the file)
  5. Fill in the template, and verify autofilled data correct!
  6. Once filled in, append(!) the new rows from the TEMPLATE file to the end of the corresponding library metadata file, and update this PR
  7. Wait for checks for library metadata to pass
  8. Request review!

Pre-review checklist (new publications)

  • Publication is published
    • Preprints currently not accepted?
  • Checked the publication is not already in the database?
  • Checked samples in this publication are not previously published data?
    • Newly re-sequenced metagenomes are OK!
  • Samples are shotgun metagenomes and not amplicon data
    • Note: hostassociated-singlegenome may also contain whole-genome enriched data
  • Checked the list follows conventions as described in the corresponding sample type's README file (e.g. using ERS/SRS accession codes for ENA/SRA)?
  • Once sample table validation completed Library metadata has been added
    • Use @spaam-bot please autofill <table_name> <project_id> to get a half-filled template! May take a minute or so to get the comment with the file
    • Fill in template, and verify autofill data correct!
    • Once filled in, append(!) the new rows to the end of the corresponding library metadata file
  • Changelog is updated to include the publication under 'Added'?

C14 lab codes enums for the C14 extension
@aidaanva aidaanva merged commit 4e4191b into c14-enums Jan 27, 2025
3 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant