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Add PlaDiaz 2025 Samples and Libraries #1355

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Add PlaDiaz 2025 Samples and Libraries #1355

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a16900a
Add PlaDiaz2025 samples
jfy133 Feb 7, 2025
84e7556
Added PlaDiaz2025
jfy133 Feb 7, 2025
83a0e2f
Add PlaDiz2025 libraries
jfy133 Feb 7, 2025
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2 changes: 2 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -13,6 +13,8 @@ and this project follows to [Calendar Versioning](https://calver.org/).

#### Ancient Single Genome: Host Associated

- Pla-Diaz 2025 10.1186/s12915-024-02108-4 (added by @jfy133)

#### Ancient Metagenome: Environmental

### Changed
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1 change: 1 addition & 0 deletions ...entsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv
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Expand Up @@ -3159,3 +3159,4 @@ Fiddaman2023 2023 10.1126/science.adg2238 OL1584 SRA PRJEB64489 ERS16164996 OL15
Fiddaman2023 2023 10.1126/science.adg2238 OL1584 SRA PRJEB64489 ERS16164996 OL1584ii double AmpliTaq Gold DNA none Illumina NovaSeq 6000 SINGLE Targeted-Capture 23678785 ERR11752806 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR117/006/ERR11752806/ERR11752806.fastq.gz 048c5746773f3c55c700d50f2e3dbb18 1664874891
Fiddaman2023 2023 10.1126/science.adg2238 OL1585 SRA PRJEB64489 ERS16164997 OL1585 double AmpliTaq Gold DNA none Illumina NovaSeq 6000 SINGLE Targeted-Capture 20374738 ERR11752797 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR117/097/ERR11752797/ERR11752797.fastq.gz f984b19b9778e16891f45ab5bc7394e4 584538336
Fiddaman2023 2023 10.1126/science.adg2238 OL1585 SRA PRJEB64489 ERS16164997 OL1585 double AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE Targeted-Capture 2994421 ERR11752832 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR117/032/ERR11752832/ERR11752832.fastq.gz 05838e7aa914b34d6e43e0585467c2fc 109193304
PlaDiaz2025 2025 10.1186/s12915-024-02108-4 W86 ENA PRJEB62102 ERS15424082 W86_UDG double AmpliTaq Gold DNA full-udg NextSeq 500 PAIRED Targeted-Capture 9133926 ERR11451736 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/036/ERR11451736/ERR11451736_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/036/ERR11451736/ERR11451736_2.fastq.gz eed1fa2cb74eb2a4c986f883b91ea3a9;799d3ad713b36f1e219f29240c5a38c2 196394265;200211218
1 change: 1 addition & 0 deletions ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv
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Expand Up @@ -734,3 +734,4 @@ Fiddaman2023 2023 10.1126/science.adg2238 Naderi Tepe 38.01 57.02 Iran OL2267 Ga
Fiddaman2023 2023 10.1126/science.adg2238 Castillo de Montsoriu 41.783 2.540 Spain OL1999 Gallus gallus 400 10.1126/science.adg2238 virus Gallid alphaherpesvirus 2 bone chromosome SRA raw PRJEB64489 ERS16164995
Fiddaman2023 2023 10.1126/science.adg2238 Kazan City 55.791 49.121 Russia OL1584 Gallus gallus 400 10.1126/science.adg2238 virus Gallid alphaherpesvirus 2 bone chromosome SRA raw PRJEB64489 ERS16164996
Fiddaman2023 2023 10.1126/science.adg2238 Cheboksary City 56.152 47.246 Russia OL1585 Gallus gallus 400 10.1126/science.adg2238 virus Gallid alphaherpesvirus 2 bone chromosome SRA raw PRJEB64489 ERS16164997
PlaDiaz2025 2025 10.1186/s12915-024-02108-4 Ostrów Tumski, Wroclaw 51.114 17.047 Poland W86 Homo sapiens 300 10.1186/s12915-024-02108-4 bacteria Treponema pallidum tooth chromosome ENA raw PRJEB62102 ERS15424082