adds hdf5suite and example .hdf file

Sage-Bionetworks-Workflows · Jul 26, 2023 · 6479753 · 6479753
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commit 6479753
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diff --git a/src/dcqc/file.py b/src/dcqc/file.py
@@ -112,6 +112,7 @@ def get_file_type(cls, file_type: str) -> FileType:
 FileType("CSV", (".csv"), "format_3752")
 FileType("BAM", (".bam"), "format_2572")
 FileType("FASTQ", (".fastq", ".fastq.gz", ".fq", ".fq.gz"), "format_1930")
+FileType("HDF5", (".hdf", ".hdf5", ".h5", ".he5"), "format_3590")
 
 
 # TODO: Leverage post-init function in dataclasses

diff --git a/src/dcqc/suites/suites.py b/src/dcqc/suites/suites.py
@@ -53,3 +53,7 @@ class TXTSuite(FileSuite):
 
 class CSVSuite(FileSuite):
     file_type = FileType.get_file_type("CSV")
+
+
+class HDF5Suite(FileSuite):
+    file_type = FileType.get_file_type("HDF5")
diff --git a/tests/data/test.hdf b/tests/data/test.hdf