[ORCA-261] Adds HDF5Suite

[BWMac]

This PR adds support for tests specific to HDF5 files by introducing the HDF5Suite.

The file extensions included are .hdf, .hdf5, .h5, and .he5.

This change has been tested with nf-dcqc both locally and on Tower. Example output using the qc-file command:

dcqc qc-file -t HDF5 -m '{"md5_checksum": "93d78663da24b6a708f6c81207e4410a"}' tests/data/test.hdf
{
  "type": "HDF5Suite",
  "target": {
    "id": null,
    "files": [
      {
        "url": "tests/data/test.hdf",
        "metadata": {
          "md5_checksum": "93d78663da24b6a708f6c81207e4410a"
        },
        "type": "HDF5",
        "name": "test.hdf",
        "local_path": "/var/folders/sr/3g4hnkfd4ld306tty7kqf1rr0000gr/T/dcqc-staged-b_zylzop/test.hdf"
      }
    ],
    "type": "SingleTarget"
  },
  "suite_status": {
    "required_tests": [
      "FileExtensionTest",
      "Md5ChecksumTest"
    ],
    "skipped_tests": [],
    "status": "GREEN"
  },
  "tests": [
    {
      "type": "FileExtensionTest",
      "tier": 1,
      "is_external_test": false,
      "status": "passed"
    },
    {
      "type": "Md5ChecksumTest",
      "tier": 1,
      "is_external_test": false,
      "status": "passed"
    }
  ]
}

It also adds an example test.hdf file for testing purposes.

[swarmia]

✅  Linked to Story ORCA-261 · DCQC: Add support for hdf5 files
➡️  Part of Epic ORCA-182 · DCQC tests
➡️  Part of IBCDPE-502 · DCQC

[codecov]

Codecov Report

Merging #46 (3e46823) into main (175d3fa) will not change coverage.
The diff coverage is 100.00%.

@@            Coverage Diff            @@
##              main       #46   +/-   ##
=========================================
  Coverage   100.00%   100.00%           
=========================================
  Files           23        23           
  Lines         1169      1172    +3     
  Branches       192       192           
=========================================
+ Hits          1169      1172    +3     

Files Changed	Coverage Δ
src/dcqc/file.py	100.00% <100.00%> (ø)
src/dcqc/suites/suites.py	100.00% <100.00%> (ø)

[thomasyu888]

🪐 Nice! This is great!

With these, we can work together with Adam to add tests for some of the file formats we just added.