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thomasyu888 committed Mar 11, 2019
1 parent 8744d0a commit 0edd1aa
Showing 1 changed file with 14 additions and 5 deletions.
19 changes: 14 additions & 5 deletions genie/dashboard_table_updater.py
Original file line number Diff line number Diff line change
Expand Up @@ -505,11 +505,20 @@ def update_wiki(syn, database_mappingdf):

centersdf = centers.asDataFrame()
now = datetime.datetime.now()
markdown = ["_Updated %s/%s/%s_\n\n" % (now.month, now.day, now.year),
"##Count of Clinical Samples\n",
"${synapsetable?query=SELECT Center%2C Clinical%2C Release FROM " + cumulative_sample_count_synid+ "}\n\n",
"\n\n##Primary Oncotree Codes\n\n",
"${synapsetable?query=SELECT Oncotree%5FCode%2C " + "%2C ".join(centersdf['CENTER'].unique()) + "%2C Total FROM " + primary_code_synId + " ORDER BY Total DESC&limit=15}\n\n"]
markdown = \
["_Updated {month}/{day}/{year}_\n\n".format(
month=now.month,
day=now.day,
year=now.year),
"##Count of Clinical Samples\n",
"${synapsetable?query=SELECT Center%2C Clinical%2C Release FROM " +
cumulative_sample_count_synid + "}\n\n",
"\n\n##Primary Oncotree Codes\n\n",
"${synapsetable?query=SELECT Oncotree%5FCode%2C " +
"%2C ".join(centersdf['CENTER'].unique()) +
"%2C Total FROM " + primary_code_synId +
" ORDER BY Total DESC&limit=15}\n\n"]

wikiPage = syn.getWiki("syn3380222", 235803)
wikiPage.markdown = "".join(markdown)
syn.store(wikiPage)
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