Change to Python 3.13 for development

Update Python version to 3.13 in development and documentation environments, and
revise documentation to reflect Python 3.11 as the minimum supported version.
Bump various package versions across requirements and configuration files to
their latest stable releases.

SalishSeaTools/docs/pkg_development.rst

@@ -16,26 +16,25 @@
 
 .. _SalishSeaToolsPackageDevelopment:
 
-*****************************************
-:kbd:`SalishSeaTools` Package Development
-*****************************************
+********************************************
+:py:obj:`SalishSeaTools` Package Development
+********************************************
 
 .. _SalishSeaToolsPythonVersions:
 
 Python Versions
 ===============
 
-The :kbd:`SalishSeaTools` package is developed and tested using `Python`_ 3.9.
-The package uses some Python language features that are not available in versions prior to 3.6,
-in particular:
+.. image:: https://img.shields.io/python/required-version-toml?tomlFilePath=https://raw.githubusercontent.com/SalishSeaCast/SalishSeaCmd/main/pyproject.toml&logo=Python&logoColor=gold&label=Python
+    :target: https://docs.python.org/3
+    :alt: Python Version from PEP 621 TOML
 
-* `formatted string literals`_
-  (aka *f-strings*)
-* the `file system path protocol`_
+The :py:obj:`SalishSeaTools` package is developed using `Python`_ 3.13.
+The minimum supported Python version is 3.11.
+The :ref:`SalishSeaToolsContinuousIntegration` workflow on GitHub ensures that the package
+is tested for all versions of Python>=3.11.
 
 .. _Python: https://www.python.org/
-.. _formatted string literals: https://docs.python.org/3/reference/lexical_analysis.html#f-strings
-.. _file system path protocol: https://docs.python.org/3/whatsnew/3.6.html#whatsnew36-pep519
 
 
 .. _SalishSeaToolsGettingTheCode:

SalishSeaTools/envs/environment-dev.yaml

@@ -36,7 +36,7 @@ dependencies:
   - openpyxl
   - pandas
   - pip
-  - python=3.12
+  - python=3.13
   - pytz
   - python-dateutil
   - pyyaml

SalishSeaTools/envs/requirements.txt

@@ -9,7 +9,7 @@
 
 alabaster==1.0.0
 angles==2.0
-anyio==4.7.0
+anyio==4.8.0
 argon2-cffi==23.1.0
 argon2-cffi-bindings==21.2.0
 arrow==1.3.0
@@ -29,7 +29,7 @@ certifi==2024.12.14
 cffi==1.17.1
 cfgv==3.3.1
 cftime==1.6.4
-charset-normalizer==3.4.0
+charset-normalizer==3.4.1
 click==8.1.8
 cliff==4.8.0
 cmd2==2.5.8
@@ -68,11 +68,11 @@ httpcore==1.0.7
 httpx==0.28.1
 hyperframe==6.0.1
 hyperlink==21.0.0
-identify==2.6.4
+identify==2.6.5
 idna==3.10
 imagesize==1.4.1
 importlib_metadata==8.5.0
-importlib_resources==6.4.5
+importlib_resources==6.5.2
 iniconfig==2.0.0
 ipdb==0.13.13
 ipykernel==6.29.5
@@ -92,7 +92,7 @@ jupyter_client==8.6.3
 jupyter_core==5.7.2
 jupyter-events==0.11.0
 jupyter-lsp==2.2.5
-jupyter_server==2.14.2
+jupyter_server==2.15.0
 jupyter_server_terminals==0.5.3
 jupyterlab==4.3.4
 jupyterlab_pygments==0.3.0
@@ -105,12 +105,12 @@ MarkupSafe==3.0.2
 matplotlib==3.10.0
 matplotlib-inline==0.1.7
 mdurl==0.1.2
-mistune==3.0.2
+mistune==3.1.0
 more-itertools==10.5.0
 munkres==1.1.4
 mypy_extensions==1.0.0
-nbclient==0.10.1
-nbconvert==7.16.4
+nbclient==0.10.2
+nbconvert==7.16.5
 nbformat==5.10.4
 nbsphinx==0.9.5
 nest_asyncio==1.6.0
@@ -128,7 +128,7 @@ pathspec==0.12.1
 pbr==6.1.0
 pexpect==4.9.0
 pickleshare==0.7.5
-pillow==11.0.0
+pillow==11.1.0
 pip==24.3.1
 pkgutil_resolve_name==1.3.10
 platformdirs==4.3.6
@@ -137,12 +137,12 @@ pre_commit==4.0.1
 prettytable==3.12.0
 prometheus_client==0.21.1
 prompt_toolkit==3.0.48
-psutil==6.1.0
+psutil==6.1.1
 ptyprocess==0.7.0
 pure_eval==0.2.3
 pycparser==2.22
-Pygments==2.18.0
-pyparsing==3.2.0
+Pygments==2.19.1
+pyparsing==3.2.1
 pyperclip==1.9.0
 PySide6==6.8.1
 PySocks==1.7.1
@@ -161,7 +161,7 @@ rfc3339_validator==0.1.4
 rfc3986-validator==0.1.1
 rich==13.9.4
 rpds-py==0.22.3
-SalishSeaTools==24.1.dev0
+SalishSeaTools==25.1.dev0
 scipy==1.15.0
 SecretStorage==3.3.3
 Send2Trash==1.8.3
@@ -198,16 +198,14 @@ typing_extensions==4.12.2
 typing_utils==0.1.0
 tzdata==2024.2
 ukkonen==1.0.1
-unicodedata2==15.1.0
 uri-template==1.3.0
-urllib3==2.2.3
+urllib3==2.3.0
 userpath==1.9.2
 virtualenv==20.28.1
 wcwidth==0.2.13
 webcolors==24.11.1
 webencodings==0.5.1
 websocket-client==1.8.0
-wheel==0.45.1
-xarray==2025.1.0
+xarray==2025.1.1
 zipp==3.21.0
 zstandard==0.23.0

environment-rtd.yaml

@@ -12,7 +12,7 @@ dependencies:
   - jupyter
   - matplotlib
   - pip
-  - python=3.12
+  - python=3.13
 
   # Sphinx and extensions we use
   - nbsphinx==0.9.5