Merge pull request #199 from SciCatProject/update-deps

Update dependencies
SciCatProject · Apr 12, 2024 · b5c3257 · b5c3257
2 parents 768a180 + 9250683
commit b5c3257
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Showing 23 changed files with 204 additions and 209 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -12,8 +12,8 @@ jobs:
     name: Formatting and static analysis
     runs-on: ubuntu-22.04
     steps:
-      - uses: actions/checkout@v3
-      - uses: actions/setup-python@v4
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
       - run: python -m pip install --upgrade pip
       - run: python -m pip install -r requirements/ci.txt
       - run: tox -e static
@@ -27,7 +27,7 @@ jobs:
     runs-on: ubuntu-22.04
     steps:
       - uses: actions/checkout@v3
-      - uses: actions/setup-python@v4
+      - uses: actions/setup-python@v5
         with:
           python-version: 3.11
       - run: python -m pip install --upgrade pip
@@ -50,8 +50,8 @@ jobs:
     steps:
       - run: sudo apt install --yes docker-compose
         if: ${{ contains(matrix.variant.os, 'ubuntu') }}
-      - uses: actions/checkout@v3
-      - uses: actions/setup-python@v4
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python }}
       - run: python -m pip install --upgrade pip

diff --git a/.github/workflows/codeql-analysis.yml b/.github/workflows/codeql-analysis.yml
@@ -18,7 +18,7 @@ jobs:
 
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v3
+      uses: actions/checkout@v4
 
     # Initializes the CodeQL tools for scanning.
     - name: Initialize CodeQL

diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
@@ -21,15 +21,15 @@ jobs:
     runs-on: ubuntu-22.04
     steps:
       - run: sudo apt install --yes pandoc
-      - uses: actions/checkout@v3
-      - uses: actions/setup-python@v4
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
         with:
           python-version: 3.11
       - run: python -m pip install --upgrade pip
       - run: python -m pip install -r requirements/ci.txt
       - run: tox -e docs
       - run: touch html/.nojekyll
-      - uses: actions/upload-artifact@v3
+      - uses: actions/upload-artifact@v4
         with:
           name: documentation
           path: html/

diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
@@ -10,8 +10,8 @@ jobs:
     name: Check if package can be released
     runs-on: ubuntu-22.04
     steps:
-      - uses: actions/checkout@v3
-      - uses: actions/setup-python@v4
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
       - run: python -m pip install --upgrade pip
       - run: python -m pip install -r requirements/ci.txt
       - run: tox -e check-release
@@ -22,19 +22,19 @@ jobs:
     runs-on: ubuntu-22.04
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0  # history required so setuptools_scm can determine version
 
-      - uses: actions/setup-python@v4
+      - uses: actions/setup-python@v5
       - run: python -m pip install --upgrade pip
       - run: python -m pip install -r requirements/wheels.txt
 
       - name: Build wheels
         run: python -m build
 
       - name: Upload wheels
-        uses: actions/upload-artifact@v2
+        uses: actions/upload-artifact@v4
         with:
           name: dist
           path: dist
@@ -49,7 +49,7 @@ jobs:
     if: github.event_name == 'release' && github.event.action == 'published'
 
     steps:
-      - uses: actions/download-artifact@v2
+      - uses: actions/download-artifact@v4
       - uses: pypa/[email protected]
 
   docs:

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -12,14 +12,14 @@ repos:
     - id: trailing-whitespace
       args: [--markdown-linebreak-ext=md]
 - repo: https://github.com/kynan/nbstripout
-  rev: 0.6.0
+  rev: 0.7.1
   hooks:
     - id: nbstripout
       types: ["jupyter"]
       args: ["--drop-empty-cells",
              "--extra-keys 'metadata.language_info.version cell.metadata.jp-MarkdownHeadingCollapsed cell.metadata.pycharm'"]
 - repo: https://github.com/astral-sh/ruff-pre-commit
-  rev: v0.2.0
+  rev: v0.3.7
   hooks:
     - id: ruff-format
       types_or: [ python, pyi ]

diff --git a/docs/user-guide/downloading.ipynb b/docs/user-guide/downloading.ipynb
@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "594ba90e-8388-434c-8d33-c9001f64b6c8",
+   "id": "0",
    "metadata": {},
    "source": [
     "# Downloading datasets\n",
@@ -54,7 +54,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "22f329e2-624f-4406-93d4-55913e83624d",
+   "id": "1",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -64,7 +64,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "4e8aea34-fb1f-469c-b2d6-c7d64880b7da",
+   "id": "2",
    "metadata": {},
    "source": [
     "## Metadata\n",
@@ -77,7 +77,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "9388ae93-2b8a-4388-8451-26dd263345d8",
+   "id": "3",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -86,7 +86,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "29dbb19b-a46e-4140-ae59-9f41ddf86340",
+   "id": "4",
    "metadata": {},
    "source": [
     "Datasets can easily be inspected in Jupyter notebooks:"
@@ -95,7 +95,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "c4ca91c2-2c51-4dee-906e-4c97c0b7a1e7",
+   "id": "5",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -104,7 +104,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "08363dcc-4a11-40b6-af47-8c6096754868",
+   "id": "6",
    "metadata": {},
    "source": [
     "All attributes listed above can be accessed directly:"
@@ -113,7 +113,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "26d06a21-8cc7-4364-b289-37041f455d9c",
+   "id": "7",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -123,7 +123,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "d78b40ef-4494-49a8-ae2f-233188ba52eb",
+   "id": "8",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -133,7 +133,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "bd441bbd-58f7-47bf-ac14-edd730c05ab4",
+   "id": "9",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -142,7 +142,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "b8ddc42b-b43d-4f95-b40a-235af77d9d27",
+   "id": "10",
    "metadata": {},
    "source": [
     "See [Dataset](../generated/classes/scitacean.Dataset.rst) for a list of available fields.\n",
@@ -153,7 +153,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "c7788a40-0d56-442c-ad19-6fe5205bc476",
+   "id": "11",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -162,7 +162,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "020840e2-9291-4d1c-b8e1-b25709fcf790",
+   "id": "12",
    "metadata": {},
    "source": [
     "## Files\n",
@@ -173,7 +173,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "2fcb8261-ff87-4788-adbd-6e6fd7a9d2f1",
+   "id": "13",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -186,7 +186,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "c5fb8c86-ccf7-4245-99da-b5b49dce4c5d",
+   "id": "14",
    "metadata": {},
    "source": [
     "Note that the `local_path` for both files is `None`.\n",
@@ -199,7 +199,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "39f3e892-919c-495b-ad9a-37c6ca46aafb",
+   "id": "15",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -209,7 +209,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "dfe6545b-4c3b-4998-9831-aece5c3bb116",
+   "id": "16",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -222,7 +222,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "0097c9f9-ff98-4bd2-971f-70fd1001d186",
+   "id": "17",
    "metadata": {},
    "source": [
     "Which populates the `local_path`:"
@@ -231,7 +231,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "cc9fec2d-51e8-462f-9c1d-e510ec2eefbf",
+   "id": "18",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -241,7 +241,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "84f086f8-e930-4ccb-ad22-5b5e0bb0cc6e",
+   "id": "19",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -250,7 +250,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "28a14e32-f2fa-45d4-9b62-2c6f04abeffb",
+   "id": "20",
    "metadata": {},
    "source": [
     "We can use it to read the file:"
@@ -259,7 +259,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "7b1ffde0-e2b9-47ff-ac68-3d327a18c124",
+   "id": "21",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -269,7 +269,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "1492ed89-a0e0-46c2-b24a-7e621f230b20",
+   "id": "22",
    "metadata": {},
    "source": [
     "If we wanted to download all files, we could pass `select=True` (or nothing, `True` is the default) to `client.download_files`.\n",
@@ -279,7 +279,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "eee2b6c2-8f6f-447e-a392-e5dc84eab6cc",
+   "id": "23",
    "metadata": {
     "nbsphinx": "hidden",
     "tags": []