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Merge branch 'neurons' into dev
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tgbugs committed Jan 26, 2024
2 parents 8278e31 + cdfb1e1 commit ad15975
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166 changes: 143 additions & 23 deletions ttl/generated/neurons/apinat-simple-sheet.ttl
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Original file line number Diff line number Diff line change
Expand Up @@ -13,34 +13,14 @@
owl:imports <https://raw.githubusercontent.com/SciCrunch/NIF-Ontology/neurons/ttl/phenotype-core.ttl>,
<https://raw.githubusercontent.com/SciCrunch/NIF-Ontology/neurons/ttl/phenotype-indicators.ttl>,
<https://raw.githubusercontent.com/SciCrunch/NIF-Ontology/neurons/ttl/phenotypes.ttl> ;
prov:wasGeneratedBy <https://github.com/tgbugs/pyontutils/blob/a0c32f2e6d3412796f52c32ff8b40987d6d272b4/neurondm/neurondm/core.py#L1421> .
prov:wasGeneratedBy <https://github.com/tgbugs/pyontutils/blob/eafd685740e5bf99f19c8ed0548e7c920bef7399/neurondm/neurondm/core.py#L1516> .

### Classes

ilxtr:neuron-type-aacar-1 a owl:Class ;
owl:equivalentClass [ a owl:Class ;
owl:intersectionOf (
ilxtr:NeuronApinatSimple
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom UBERON:0000988 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom UBERON:0001891 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom UBERON:0001894 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonPresynapticElementIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom UBERON:0002022 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasSomaLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
Expand Down Expand Up @@ -99,6 +79,16 @@ ilxtr:neuron-type-aacar-4 a owl:Class ;
owl:equivalentClass [ a owl:Class ;
owl:intersectionOf (
ilxtr:NeuronApinatSimple
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom ilxtr:vago-sympathetic-trunk ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom UBERON:0001759 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
Expand Down Expand Up @@ -165,6 +155,11 @@ ilxtr:neuron-type-aacar-5 a owl:Class ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom ILX:0738372 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom ILX:0739241 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
Expand Down Expand Up @@ -195,6 +190,11 @@ ilxtr:neuron-type-aacar-5 a owl:Class ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom ILX:0784804 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom ILX:0786163 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
Expand Down Expand Up @@ -245,6 +245,11 @@ ilxtr:neuron-type-aacar-5 a owl:Class ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom ILX:0793212 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom ilxtr:vago-sympathetic-trunk ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonPresynapticElementIn ;
owl:someValuesFrom [ a owl:Restriction ;
Expand Down Expand Up @@ -343,7 +348,12 @@ ilxtr:neuron-type-aacar-5 a owl:Class ;
owl:onProperty ilxtr:hasSomaLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom UBERON:0006459 ] ] ) ] ;
owl:someValuesFrom UBERON:0006459 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasSomaLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom UBERON:0006470 ] ] ) ] ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty ilxtr:hasInstanceInTaxon ;
owl:someValuesFrom NCBITaxon:40674 ] ;
Expand All @@ -353,6 +363,11 @@ ilxtr:neuron-type-aacar-6 a owl:Class ;
owl:equivalentClass [ a owl:Class ;
owl:intersectionOf (
ilxtr:NeuronApinatSimple
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom ILX:0739241 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
Expand Down Expand Up @@ -383,6 +398,11 @@ ilxtr:neuron-type-aacar-6 a owl:Class ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom ILX:0791105 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom ilxtr:vago-sympathetic-trunk ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonPresynapticElementIn ;
owl:someValuesFrom [ a owl:Restriction ;
Expand Down Expand Up @@ -685,28 +705,54 @@ ilxtr:neuron-type-aacar-10a a owl:Class ;
owl:equivalentClass [ a owl:Class ;
owl:intersectionOf (
ilxtr:NeuronApinatSimple
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom ilxtr:cardiac-interganglionic-nerve ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonPresynapticElementIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom ILX:0793555 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonPresynapticElementIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom ILX:0793556 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasForwardConnectionPhenotype ;
owl:someValuesFrom ilxtr:neuron-type-aacar-7a ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasForwardConnectionPhenotype ;
owl:someValuesFrom ilxtr:neuron-type-aacar-8a ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasForwardConnectionPhenotype ;
owl:someValuesFrom ilxtr:neuron-type-aacar-10v ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasSomaLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom ILX:0793555 ] ] ) ] ;
rdfs:subClassOf [ a owl:Restriction ;
owl:onProperty ilxtr:hasInstanceInTaxon ;
owl:someValuesFrom NCBITaxon:40674 ] ;
ilxtr:hasOrganTarget UBERON:0000948 .

ilxtr:neuron-type-aacar-10v a owl:Class ;
owl:equivalentClass [ a owl:Class ;
owl:intersectionOf (
ilxtr:NeuronApinatSimple
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom ilxtr:cardiac-interganglionic-nerve ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonPresynapticElementIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom ILX:0793555 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonPresynapticElementIn ;
owl:someValuesFrom [ a owl:Restriction ;
Expand All @@ -718,6 +764,9 @@ ilxtr:neuron-type-aacar-10v a owl:Class ;
[ a owl:Restriction ;
owl:onProperty ilxtr:hasForwardConnectionPhenotype ;
owl:someValuesFrom ilxtr:neuron-type-aacar-8v ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasForwardConnectionPhenotype ;
owl:someValuesFrom ilxtr:neuron-type-aacar-10a ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasSomaLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
Expand All @@ -732,6 +781,16 @@ ilxtr:neuron-type-aacar-11 a owl:Class ;
owl:equivalentClass [ a owl:Class ;
owl:intersectionOf (
ilxtr:NeuronApinatSimple
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom ilxtr:vago-sympathetic-trunk ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom UBERON:0001759 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
Expand Down Expand Up @@ -762,6 +821,11 @@ ilxtr:neuron-type-aacar-11 a owl:Class ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom UBERON:0002079 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonSensorySubcellularElementIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom UBERON:0002080 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonSensorySubcellularElementIn ;
owl:someValuesFrom [ a owl:Restriction ;
Expand Down Expand Up @@ -789,6 +853,11 @@ ilxtr:neuron-type-aacar-12 a owl:Class ;
owl:equivalentClass [ a owl:Class ;
owl:intersectionOf (
ilxtr:NeuronApinatSimple
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom ILX:0738312 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonPresynapticElementIn ;
owl:someValuesFrom [ a owl:Restriction ;
Expand Down Expand Up @@ -839,6 +908,11 @@ ilxtr:neuron-type-aacar-13 a owl:Class ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom UBERON:0002318 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonPresynapticElementIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom UBERON:0006493 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonSensorySubcellularElementIn ;
owl:someValuesFrom [ a owl:Restriction ;
Expand All @@ -854,6 +928,9 @@ ilxtr:neuron-type-aacar-13 a owl:Class ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom UBERON:0002348 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasForwardConnectionPhenotype ;
owl:someValuesFrom ilxtr:neuron-type-aacar-14 ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasSomaLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
Expand Down Expand Up @@ -904,6 +981,49 @@ ilxtr:neuron-type-aacar-13 a owl:Class ;
owl:someValuesFrom NCBITaxon:40674 ] ;
ilxtr:hasOrganTarget UBERON:0000948 .

ilxtr:neuron-type-aacar-14 a owl:Class ;
owl:equivalentClass [ a owl:Class ;
owl:intersectionOf (
ilxtr:NeuronApinatSimple
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonPresynapticElementIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom UBERON:0006493 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasForwardConnectionPhenotype ;
owl:someValuesFrom ilxtr:neuron-type-aacar-15 ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasSomaLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom UBERON:0006469 ] ] ) ] .

ilxtr:neuron-type-aacar-15 a owl:Class ;
owl:equivalentClass [ a owl:Class ;
owl:intersectionOf (
ilxtr:NeuronApinatSimple
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom UBERON:0001896 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom UBERON:0002258 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasAxonPresynapticElementIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom UBERON:0009050 ] ]
[ a owl:Restriction ;
owl:onProperty ilxtr:hasSomaLocatedIn ;
owl:someValuesFrom [ a owl:Restriction ;
owl:onProperty partOf: ;
owl:someValuesFrom UBERON:0006493 ] ] ) ] .

ilxtr:neuron-type-bolew-unbranched-1 a owl:Class ;
owl:equivalentClass [ a owl:Class ;
owl:intersectionOf (
Expand Down Expand Up @@ -4928,4 +5048,4 @@ ilxtr:neuron-type-sstom-13 owl:equivalentClass ilxtr:neuron-type-sstom-11 ;
ilxtr:neuron-type-sstom-14 owl:equivalentClass ilxtr:neuron-type-sstom-12 ;
ilxtr:hasOrganTarget UBERON:0000945 .

### Serialized using the ttlser deterministic serializer v1.2.1
### Serialized using the ttlser deterministic serializer v1.2.2
18 changes: 17 additions & 1 deletion ttl/generated/neurons/apinatomy-neuron-populations.ttl
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Original file line number Diff line number Diff line change
Expand Up @@ -348,4 +348,20 @@ ilxtr:neuron-type-sstom-13 rdfs:label "neuron type sstom 13" ;
ilxtr:neuron-type-sstom-14 rdfs:label "neuron type sstom 14" ;
rdfs:subClassOf ilxtr:NeuronEBM .

### Serialized using the ttlser deterministic serializer v1.2.0
ilxtr:NeuronAacar rdfs:label "neuron in the aacar cardiac model" .

ilxtr:NeuronBolew rdfs:label "neuron in the bolew defensive breathing model" .

ilxtr:NeuronBromo rdfs:label "neuron in the bromo bronchomotor model" .

ilxtr:NeuronKblad rdfs:label "neuron in the kblad bladder model" .

ilxtr:NeuronPancr rdfs:label "neuron in the pancr pancreas model" .

ilxtr:NeuronSdcol rdfs:label "neuron in the sdcol descending colon model" .

ilxtr:NeuronSplen rdfs:label "neuron in the splen spleen model" .

ilxtr:NeuronSstom rdfs:label "neuron in the sstom stomach model" .

### Serialized using the ttlser deterministic serializer v1.2.2
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