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Trials Loading, Keyword Search Generation, and Trials Matching (#22)
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# Trials Loading, Keyword Search Generation, and Trials Matching

## ⚙️ Release Notes 
- Loads FHIR resources into an LLM to determine keywords.
- Uses keywords to query the NIC API.
- Match NCI results with local FHIR resources to provide
recommendations.


### Code of Conduct & Contributing Guidelines 

By submitting creating this pull request, you agree to follow our [Code
of
Conduct](https://github.com/StanfordBDHG/.github/blob/main/CODE_OF_CONDUCT.md)
and [Contributing
Guidelines](https://github.com/StanfordBDHG/.github/blob/main/CONTRIBUTING.md):
- [x] I agree to follow the [Code of
Conduct](https://github.com/StanfordBDHG/.github/blob/main/CODE_OF_CONDUCT.md)
and [Contributing
Guidelines](https://github.com/StanfordBDHG/.github/blob/main/CONTRIBUTING.md).
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@PSchmiedmayer
PSchmiedmayer authored May 15, 2024
1 parent 24a3063 commit 9a7b43c
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Expand Up @@ -27,7 +27,7 @@
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Expand All @@ -50,6 +50,17 @@
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Expand Down Expand Up @@ -128,7 +139,7 @@
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Expand Down Expand Up @@ -261,7 +283,8 @@
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Expand Down Expand Up @@ -295,6 +318,46 @@
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Expand Down Expand Up @@ -322,6 +385,7 @@
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Expand Down Expand Up @@ -651,10 +717,12 @@
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Expand Down Expand Up @@ -1231,7 +1307,7 @@
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};
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8 changes: 4 additions & 4 deletions OwnYourData.xcodeproj/project.xcworkspace/xcshareddata/swiftpm/Package.resolved
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Expand Up @@ -132,8 +132,8 @@
"repositoryURL": "https://github.com/StanfordBDHG/llama.cpp",
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Expand Down Expand Up @@ -249,8 +249,8 @@
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{
Expand Down
2 changes: 1 addition & 1 deletion OwnYourData.xcodeproj/xcshareddata/xcschemes/OwnYourData.xcscheme
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Expand Up @@ -79,7 +79,7 @@
<CommandLineArguments>
<CommandLineArgument
argument = "--disableFirebase"
isEnabled = "YES">
isEnabled = "NO">
</CommandLineArgument>
<CommandLineArgument
argument = "--showOnboarding"
Expand Down
49 changes: 43 additions & 6 deletions OwnYourData/Account/ResourceSelection.swift
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Original file line number Diff line number Diff line change
Expand Up @@ -84,13 +84,50 @@ struct ResourceSelection: View {
private var mockPatients: [ModelsR4.Bundle] {
get async {
await [
.allen322Ferry570,
.beatris270Bogan287,
.edythe31Morar593,
.gonzalo160Duenas839,
.jacklyn830Veum823,
.milton509Ortiz186
.breastCancerExample
]
}
}
}


extension ModelsR4.Bundle {
private static var _breastCancerExample: ModelsR4.Bundle?
/// Example FHIR resources packed into a bundle to represent the simulated patient named Jamison785 Denesik803.
public static var breastCancerExample: ModelsR4.Bundle {
get async {
if let breastCancerExample = _breastCancerExample {
return breastCancerExample
}

let breastCancerExample = await Foundation.Bundle.main.improvedLoadFHIRBundle(
withName: "BreastCancerExample"
)
ModelsR4.Bundle._breastCancerExample = breastCancerExample
return breastCancerExample
}
}
}


extension Foundation.Bundle {
/// Loads a FHIR `Bundle` from a Foundation `Bundle`.
/// - Parameter name: Name of the JSON file in the Foundation `Bundle`
/// - Returns: The FHIR `Bundle`
public func improvedLoadFHIRBundle(withName name: String) async -> ModelsR4.Bundle {
guard let resourceURL = self.url(forResource: name, withExtension: "json") else {
fatalError("Could not find the resource \"\(name)\".json in the SpeziFHIRMockPatients Resources folder.")
}

let loadingTask = _Concurrency.Task {
let resourceData = try Data(contentsOf: resourceURL)
return try JSONDecoder().decode(Bundle.self, from: resourceData)
}

do {
return try await loadingTask.value
} catch {
fatalError("Could not decode the FHIR bundle named \"\(name).json\": \(error)")
}
}
}
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