Skip to content

Release v0.8.0

Compare
Choose a tag to compare
@priesgo priesgo released this 07 Feb 06:35
· 114 commits to master since this release

Changes

  • Integrate pangolin for lineage determination.
  • Integrate VAFator to annotate mutations with Variant Allele Frequency and subsequently classify them into clonal, intrahost or low frequency mutations.
  • Remove unnecessary --chromosome parameter, this is now inferred from the reference.
  • Transform iVar output table into VCF format and postprocess it similarly to other VCFs.
  • Conda dependencies are now modular which minimises collisions of dependencies.
  • Improve automated tests.
  • Support for other virus than SARS-CoV-2 is now tested!