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0.5.5
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@johausmann johausmann released this 28 Sep 11:25
· 41 commits to master since this release
0.5.5
619e1ed

Release notes:

  • Fixed secondary alignment output in bowtie2
  • Added custom parameters for bowtie2
  • Remove discordant reads from bowtie2 alignment
  • Removed bwa from alignment tools
  • Added option to omit singletons from re-quantification
  • Added sanity checks for alignment files
  • Added the following information to read info table:
    • flag
    • bp
    • cigar
    • total_mismatches
  • Implemented an improved mode for quantification to reduce memory footprint
  • Added Docker manifest

Known issue: Junctions reads that overlap the end of context-sequences are not properly counted

Full Changelog: 0.5.4...0.5.5

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