make chr6 more specific to MHC region

TRON-Bioinformatics · Mar 22, 2024 · 2c08937 · 2c08937
1 parent 50c9c10
commit 2c08937
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Showing 3 changed files with 3 additions and 4 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -52,9 +52,8 @@ manifest {
 }
 
 params.help_message = """
-$ nextflow run tron-bioinformatics/tronflow-hla-hd --help
+nextflow run tron-bioinformatics/tronflow-hla-hd --help
 
-N E X T F L O W  ~  version 19.07.0
 Launching `main.nf` [intergalactic_shannon] - revision: e707c77d7b
 
 Usage:

diff --git a/references/contigs_hla_reads_hg19.bed b/references/contigs_hla_reads_hg19.bed
@@ -1,4 +1,4 @@
-chr6	1	171115067
+chr6	28477797	33448354
 chr6_apd_hap1	1	4622290
 chr6_cox_hap2	1	4795371
 chr6_dbb_hap3	1	4610396

diff --git a/references/contigs_hla_reads_hg38.bed b/references/contigs_hla_reads_hg38.bed
@@ -1,4 +1,4 @@
-chr6	1	170805979
+chr6	28510120	33480577
 chr6_GL000250v2_alt	1	4672374
 chr6_KI270800v1_alt	1	175808
 chr6_KI270799v1_alt	1	152148