Synchronize configuration parameters to Academy (#5188)

I was tasked with documenting all configuration parameters in Academy.
The information I was given to document those parameters was out of
date. I have since compiled the responses from the rest of the core team
about the missing configuration parameters and compiled it here. Note
the following parameters have been left undocumented:

- `sm.skip_est_size_partitioning`
- `sm.skip_unary_partitioning_budget_check`
- `sm.merge_overlapping_ranges_experimental`
- `vfs.gcs.endpoint`

---
TYPE: NO_HISTORY
DESC: Update all configuration parameters to reflect what's available in
2.24.1

---------

Co-authored-by: Luc Rancourt <[email protected]>

tiledb/api/c_api/config/config_api_external.h

@@ -180,7 +180,7 @@ TILEDB_EXPORT void tiledb_config_free(tiledb_config_t** config) TILEDB_NOEXCEPT;
  * - `sm.consolidation.steps` <br>
  *    The number of consolidation steps to be performed when executing
  *    the consolidation algorithm.<br>
- *    **Default**: 1
+ *    **Default**: UINT32_MAX
  * - `sm.consolidation.purge_deleted_cells` <br>
  *    **Experimental** <br>
  *    Purge deleted cells from the consolidated fragment or not.<br>
@@ -207,6 +207,25 @@ TILEDB_EXPORT void tiledb_config_free(tiledb_config_t** config) TILEDB_NOEXCEPT;
  *    `sm.consolidation.timestamp_start` and this value (inclusive). <br>
  *    Only for `fragments` and `array_meta` consolidation mode. <br>
  *    **Default**: UINT64_MAX
+ * - `sm.encryption_key` <br>
+ *    The key for encrypted arrays. <br>
+ *    **Default**: ""
+ * - `sm.encryption_type` <br>
+ *    The type of encryption used for encrypted arrays. <br>
+ *    **Default**: "NO_ENCRYPTION"
+ * - `sm.enumerations_max_size` <br>
+ *    Maximum in memory size for an enumeration. If the enumeration is <br>
+ *    var sized, the size will include the data and the offsets. <br>
+ *    **Default**: 10MB
+ * - `sm.enumerations_max_total_size` <br>
+ *    Maximum in memory size for all enumerations. If the enumeration <br>
+ *    is var sized, the size will include the data and the offsets. <br>
+ *    **Default**: 50MB
+ * - `sm.max_tile_overlap_size` <br>
+ *    Maximum size for the tile overlap structure which holds <br>
+ *    information about which tiles are covered by ranges. Only used <br>
+ *    in dense reads and legacy reads. <br>
+ *    **Default**: 300MB
  * - `sm.memory_budget` <br>
  *    The memory budget for tiles of fixed-sized attributes (or offsets for
  *    var-sized attributes) to be fetched during reads.<br>
@@ -230,14 +249,21 @@ TILEDB_EXPORT void tiledb_config_free(tiledb_config_t** config) TILEDB_NOEXCEPT;
  * - `sm.query.dense.reader` <br>
  *    Which reader to use for dense queries. "refactored" or "legacy".<br>
  *    **Default**: refactored
+ * - `sm.query.dense.qc_coords_mode` <br>
+ *    Dense configuration that allows to only return the coordinates of <br>
+ *    the cells that match a query condition without any attribute data. <br>
+ *    **Default**: "false"
  * - `sm.query.sparse_global_order.reader` <br>
  *    Which reader to use for sparse global order queries. "refactored"
  *    or "legacy".<br>
- *    **Default**: legacy
+ *    **Default**: refactored
  * - `sm.query.sparse_unordered_with_dups.reader` <br>
  *    Which reader to use for sparse unordered with dups queries.
  *    "refactored" or "legacy".<br>
  *    **Default**: refactored
+ * - `sm.skip_checksum_validation` <br>
+ *    Skip checksum validation on reads for the md5 and sha256 filters. <br>
+ *    **Default**: "false"
  * - `sm.mem.malloc_trim` <br>
  *    Should malloc_trim be called on context and query destruction? This might
  *    reduce residual memory usage. <br>
@@ -270,6 +296,7 @@ TILEDB_EXPORT void tiledb_config_free(tiledb_config_t** config) TILEDB_NOEXCEPT;
  *    `sm.mem.consolidation.reader_weight` and
  *    `sm.mem.consolidation.writer_weight`. <br>
  *    **Default**: 3
+ * - `sm.mem.consolidation.writer_weight` <br>
  *    Weight used to split `sm.mem.total_budget` and assign to the
  *    writer query. The budget is split across 3 values,
  *    `sm.mem.consolidation.buffers_weight`,
@@ -352,7 +379,7 @@ TILEDB_EXPORT void tiledb_config_free(tiledb_config_t** config) TILEDB_NOEXCEPT;
  *    **Default**: 10MB
  * - `vfs.max_batch_size` <br>
  *    The maximum number of bytes in a VFS read operation<br>
- *    **Default**: UINT64_MAX
+ *    **Default**: 100MB
  * - `vfs.min_batch_size` <br>
  *    The minimum number of bytes in a VFS read operation<br>
  *    **Default**: 20MB
@@ -533,7 +560,7 @@ TILEDB_EXPORT void tiledb_config_free(tiledb_config_t** config) TILEDB_NOEXCEPT;
  *    **Default**: ""
  * - `vfs.s3.connect_timeout_ms` <br>
  *    The connection timeout in ms. Any `long` value is acceptable. <br>
- *    **Default**: 3000
+ *    **Default**: 10800
  * - `vfs.s3.connect_max_tries` <br>
  *    The maximum tries for a connection. Any `long` value is acceptable. <br>
  *    **Default**: 5
@@ -549,7 +576,7 @@ TILEDB_EXPORT void tiledb_config_free(tiledb_config_t** config) TILEDB_NOEXCEPT;
  *    The AWS SDK logging level. This is a process-global setting. The
  *    configuration of the most recently constructed context will set
  *    process state. Log files are written to the process working directory.
- *    **Default**: ""
+ *    **Default**: "Off"
  * - `vfs.s3.request_timeout_ms` <br>
  *    The request timeout in ms. Any `long` value is acceptable. <br>
  *    **Default**: 3000
@@ -631,7 +658,7 @@ TILEDB_EXPORT void tiledb_config_free(tiledb_config_t** config) TILEDB_NOEXCEPT;
  *    `config_files` (forces SDK to only consider options found in aws
  *    config files),
  *    `sts_profile_with_web_identity` (force SDK to consider assume roles/sts
- * from config files with support for web tokens, commonly used by EKS/ECS).
+ *    from config files with support for web tokens, commonly used by EKS/ECS).
  *    **Default**: auto
  *    <br>
  * - `vfs.s3.install_sigpipe_handler` <br>
@@ -693,7 +720,7 @@ TILEDB_EXPORT void tiledb_config_free(tiledb_config_t** config) TILEDB_NOEXCEPT;
  *    **Default**: "503"
  * - `rest.retry_count` <br>
  *    Number of times to retry failed REST requests <br>
- *    **Default**: 3
+ *    **Default**: 25
  * - `rest.retry_initial_delay_ms` <br>
  *    Initial delay in milliseconds to wait until retrying a REST request <br>
  *    **Default**: 500