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CI: (deps): Bump scipy from 1.10.1 to 1.11.1 in /ci #3094

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merged 2 commits into from
Jul 26, 2023

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@dependabot dependabot bot commented on behalf of github Jun 29, 2023

Bumps scipy from 1.10.1 to 1.11.1.

Release notes

Sourced from scipy's releases.

SciPy 1.11.1 Release Notes

SciPy 1.11.1 is a bug-fix release with no new features compared to 1.11.0. In particular, a licensing issue discovered after the release of 1.11.0 has been addressed.

Authors

  • Name (commits)
  • h-vetinari (1)
  • Robert Kern (1)
  • Ilhan Polat (4)
  • Tyler Reddy (8)

A total of 4 people contributed to this release. People with a "+" by their names contributed a patch for the first time. This list of names is automatically generated, and may not be fully complete.

SciPy 1.11.0 Release Notes

SciPy 1.11.0 is the culmination of 6 months of hard work. It contains many new features, numerous bug-fixes, improved test coverage and better documentation. There have been a number of deprecations and API changes in this release, which are documented below. All users are encouraged to upgrade to this release, as there are a large number of bug-fixes and optimizations. Before upgrading, we recommend that users check that their own code does not use deprecated SciPy functionality (to do so, run your code with python -Wd and check for DeprecationWarning s). Our development attention will now shift to bug-fix releases on the 1.11.x branch, and on adding new features on the main branch.

This release requires Python 3.9+ and NumPy 1.21.6 or greater.

For running on PyPy, PyPy3 6.0+ is required.

Highlights of this release

  • Several scipy.sparse array API improvements, including sparse.sparray, a new public base class distinct from the older sparse.spmatrix class, proper 64-bit index support, and numerous deprecations paving the way to a modern sparse array experience.
  • scipy.stats added tools for survival analysis, multiple hypothesis testing, sensitivity analysis, and working with censored data.

... (truncated)

Commits
  • cfe8011 REL: 1.11.1 rel commit [wheel build]
  • 450d8aa Merge pull request #18779 from tylerjereddy/treddy_1_11_1_prep
  • 6f942e8 DOC: update 1.11.1 relnotes
  • 145cec5 MAINT: fix unuran licensing
  • 0760bab MAINT:linalg.det:Return scalars for singleton inputs (#18763)
  • a1c6f99 MAINT:linalg:Use only NumPy types in lu
  • 5cdc2fe MAINT:linalg:Remove memcpy from lu
  • d9ac3f3 FIX:linalg:Guard against possible permute_l out of bound behavior
  • 7ec5010 BUG: fix handling for factorial(..., exact=False) for 0-dim array inputs (#...
  • 90415c6 BUG: Fix work array construction for various weight shapes. (#18741)
  • Additional commits viewable in compare view

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@dependabot dependabot bot requested a review from a team as a code owner June 29, 2023 12:38
@dependabot dependabot bot requested review from dcamron and removed request for a team June 29, 2023 12:38
@dependabot dependabot bot added Area: Infrastructure Pertains to project infrastructure (e.g. CI, linting) Type: Maintenance Updates and clean ups (but not wrong) labels Jun 29, 2023
@dependabot dependabot bot force-pushed the dependabot-pip-ci-scipy-1.11.1 branch 4 times, most recently from 7cdf330 to 4eca242 Compare July 8, 2023 01:19
Bumps [scipy](https://github.com/scipy/scipy) from 1.10.1 to 1.11.1.
- [Release notes](https://github.com/scipy/scipy/releases)
- [Commits](scipy/scipy@v1.10.1...v1.11.1)

---
updated-dependencies:
- dependency-name: scipy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot force-pushed the dependabot-pip-ci-scipy-1.11.1 branch from 4eca242 to a6abcce Compare July 17, 2023 19:58
This test was added in #2263, but not sure if the functionality worked
before then. Regardless, scipy now disallows passing nan for initial
values to solve_ivp, so instead of trying to hack around it, just let
the scipy error persist and don't trigger it in our code.
@dopplershift
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@dcamron I took the approach of just "don't pass nans" in our moist_lapse test. That test came in with #2263, I'm not sure if NaNs worked before then, but I'm not inclined to do a bunch of work to hack around scipy's new limitation.

@dopplershift
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Scipy disallowed non-finite initial values in scipy/scipy#18077.

@dcamron dcamron merged commit 9db08a5 into main Jul 26, 2023
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@dcamron dcamron deleted the dependabot-pip-ci-scipy-1.11.1 branch July 26, 2023 16:10
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