All files regenerated and pointer files added

toolbox/graphics/spmplot.m

@@ -490,8 +490,8 @@
 
 
 %{
-    %% Call of spmplot with name/value pairs and specifying overlay,
-    % also discarding some groups with the field include, and changing
+    %% Call of spmplot with name/value pairs. 
+    % Specifying overlay, also discarding some groups with the field include, and changing
     % the default colormap.
     % The Tag setting will be used in the next example to demonstrate the
     % undock option.
@@ -587,8 +587,8 @@
 %}
 
 %{
-    % Now test the direct use of FSM. Set two groups, e.g. those obtained
-    % from FSM.
+    % Now test the direct use of FSM. 
+    % Set two groups, e.g. those obtained from FSM.
     % Generate contaminated data
     state=100;
     randn('state', state);
@@ -904,7 +904,6 @@
     load fisheriris;
     spmplot(meas,'group',species,'typespm','lower');
 %}
-%}
 
 %{
     %% Example of use of option typespm passed as struct.

toolbox/helpfiles/FSDA/ClusterRelabel.html

@@ -29,7 +29,7 @@
 text(Y(UnitsSameGroup,1),Y(UnitsSameGroup,2),num2str(UnitsSameGroup))
 % Now (as is evident from the right panel) unit which contains group 10
 % has label '1' while group which contains unit 12 has label '2'.</pre></div></div><pre class="codeoutput">ClaLik with untrimmed units selected using crisp criterion
-Total estimated time to complete tclust:  0.35 seconds 
+Total estimated time to complete tclust:  0.36 seconds 
 </pre><a href='http://rosa.unipr.it/fsda/ClusterRelabel.html#Example_2'><img vspace="5" hspace="5" src="images\ClusterRelabel_01.png" alt="Click here for the graphical output of this example (link to Ro.S.A. website)."> </a></p></div></div></div><p> </p></div></div></div><div class="ref_sect" itemprop="content"><h2 id="Inputs">Input Arguments</h2><div class="expandableContent"><div class="arguments"><div class="input_argument_container"><p class="switch"><a class="expandAllLink" href="javascript:void(0);">expand all</a></p><div class="expandableContent"> <div id="inputarg_IDX" class="clearfix"> </div> <h3 id="input_argument_IDX" class="expand"> <span> <a href="javascript:void(0);" style="display: block;" title="Expand/Collapse"> <span class="argument_name"><code>IDX</code> &#8212; Assignment of units to groups for different values of c
                    (restriction factor) and k (number of groups). </span>  </a><span class="example_desc">Cell.</span></span></h3> <div class="collapse"> <p><p>Cell of size length(kk)-times length(cc), where kk is
                    the vector which contains the number of groups which

toolbox/helpfiles/FSDA/CorAna.html

@@ -236,7 +236,7 @@
               The sum of the numbers in a column is equal to 1
 CntrbDim2In = relative contribution of latent dimension to explain total Inertia of a point
               CntrbDim2In_1+CntrbDim2In_2+...+CntrbDim2In_K=1
-</pre><a href='http://rosa.unipr.it/fsda/CorAna.html#ExtraExample_2'><img vspace="5" hspace="5" src="images\CorAna_02.png" alt="Click here for the graphical output of this example (link to Ro.S.A. website)"> </a></p></div></div><div id="Extraexample_3" class="example_module expandableContent"><div id="ExtraExample_3"></div><h3 class="expand"><span><a href="javascript:void(0);" style="display: block;" title="Expand/Collapse"><span class="example_title"><li><img alt="" src="images_help/M.gif" style="width: 12px; height: 12px"> Example of interpretation of values close to the center.</li></span></a></span></h3><div class="collapse"><p><div class="programlisting"><div class="codeinput"><pre class="matlab-code">N=[80	20	90	90	5	100	40
+</pre><a href='http://rosa.unipr.it/fsda/CorAna.html#ExtraExample_2'><img vspace="5" hspace="5" src="images\CorAna_02.png" alt="Click here for the graphical output of this example (link to Ro.S.A. website)"> <img vspace="5" hspace="5" src="images\CorAna_03.png" alt=""> </a></p></div></div><div id="Extraexample_3" class="example_module expandableContent"><div id="ExtraExample_3"></div><h3 class="expand"><span><a href="javascript:void(0);" style="display: block;" title="Expand/Collapse"><span class="example_title"><li><img alt="" src="images_help/M.gif" style="width: 12px; height: 12px"> Example of interpretation of values close to the center.</li></span></a></span></h3><div class="collapse"><p><div class="programlisting"><div class="codeinput"><pre class="matlab-code">N=[80	20	90	90	5	100	40
 50	40	40	70	10	100	40
 10	70	20	90	80	99	40
 0	80	2	20	95	20	40
@@ -337,7 +337,7 @@
               The sum of the numbers in a column is equal to 1
 CntrbDim2In = relative contribution of latent dimension to explain total Inertia of a point
               CntrbDim2In_1+CntrbDim2In_2+...+CntrbDim2In_K=1
-</pre><a href='http://rosa.unipr.it/fsda/CorAna.html#ExtraExample_3'><img vspace="5" hspace="5" src="images\CorAna_03.png" alt="Click here for the graphical output of this example (link to Ro.S.A. website)"> </a></p></div></div></div></div></div><div class="ref_sect" itemprop="content"><h2 id="Inputs">Input Arguments</h2><div class="expandableContent"><div class="arguments"><div class="input_argument_container"><p class="switch"><a class="expandAllLink" href="javascript:void(0);">expand all</a></p><div class="expandableContent"> <div id="inputarg_N" class="clearfix"> </div> <h3 id="input_argument_N" class="expand"> <span> <a href="javascript:void(0);" style="display: block;" title="Expand/Collapse"> <span class="argument_name"><code>N</code> &#8212; Contingency table (default) or n-by-2 input dataset. </span>  </a><span class="example_desc">2D Array or Table.</span></span></h3> <div class="collapse"> <p><p>2D array or table or timetable which contains the input contingency
+</pre><a href='http://rosa.unipr.it/fsda/CorAna.html#ExtraExample_3'><img vspace="5" hspace="5" src="images\CorAna_04.png" alt="Click here for the graphical output of this example (link to Ro.S.A. website)"> <img vspace="5" hspace="5" src="images\CorAna_05.png" alt=""> </a></p></div></div></div></div></div><div class="ref_sect" itemprop="content"><h2 id="Inputs">Input Arguments</h2><div class="expandableContent"><div class="arguments"><div class="input_argument_container"><p class="switch"><a class="expandAllLink" href="javascript:void(0);">expand all</a></p><div class="expandableContent"> <div id="inputarg_N" class="clearfix"> </div> <h3 id="input_argument_N" class="expand"> <span> <a href="javascript:void(0);" style="display: block;" title="Expand/Collapse"> <span class="argument_name"><code>N</code> &#8212; Contingency table (default) or n-by-2 input dataset. </span>  </a><span class="example_desc">2D Array or Table.</span></span></h3> <div class="collapse"> <p><p>2D array or table or timetable which contains the input contingency
                  table (say of size I-by-J) or the original data matrix X.</p> <p>
                  In this last case N=crosstab(X(:,1),X(:,2)). As default
                  procedure assumes that the input is a contingency table.</p></p> <p class="datatypelist"><strong> Data Types: </strong><code>single| double</code></p> </div> </div><div id="namevaluepairarguments" class="clearfix"></div><h3 id="NameValuePairs" class="bottom_ruled">Name-Value Pair Arguments</h3><div class="namevaluecontainer"><p>Specify optional comma-separated pairs of <code>Name,Value</code> arguments. <code>Name</code> is the argument name and <code>Value</code> is the corresponding value. <code>Name</code> must appear  inside single quotes (<code>' '</code>).  You can specify several name and value pair arguments in any order as <code>  Name1,Value1,...,NameN,ValueN</code>.</p>  <span class="example_desc"><strong>Example:</strong><code><code> 'k',3

toolbox/helpfiles/FSDA/FM_spot_vol.html

@@ -38,7 +38,7 @@
 plot(tau_out,V_spot); 
 xlabel('tau'); 
 title('Spot volatility estimates Vs Actual values')
-legend('Actual values','Estimated values')</pre></div></div><a href='http://rosa.unipr.it/fsda/FM_spot_vol.html#Example_2'><img vspace="5" hspace="5" src="images\FM_spot_vol_02.png" alt="Click here for the graphical output of this example (link to Ro.S.A. website)."> <img vspace="5" hspace="5" src="images\FM_spot_vol_03.png" alt=""> </a></p></div></div><div id="example_3" class="example_module expandableContent"><div id="Example_3"></div><h3 class="expand"><span><a href="javascript:void(0);" style="display: block;" title="Expand/Collapse"><span class="example_title"> <li><img alt="" src="images_help/M.gif" style="width: 12px; height: 12px"> Example of call of FM_spot_vol when tau has length larger than 2M &plus; 1.</li></span></a></span></h3><div class="collapse"><p>
+legend('Actual values','Estimated values')</pre></div></div><a href='http://rosa.unipr.it/fsda/FM_spot_vol.html#Example_2'><img vspace="5" hspace="5" src="images\FM_spot_vol_02.png" alt="Click here for the graphical output of this example (link to Ro.S.A. website)."> </a></p></div></div><div id="example_3" class="example_module expandableContent"><div id="Example_3"></div><h3 class="expand"><span><a href="javascript:void(0);" style="display: block;" title="Expand/Collapse"><span class="example_title"> <li><img alt="" src="images_help/M.gif" style="width: 12px; height: 12px"> Example of call of FM_spot_vol when tau has length larger than 2M &plus; 1.</li></span></a></span></h3><div class="collapse"><p>
  The following example estimates the path of the spot volatility of a
  Heston model from a discrete sample. The Heston model assumes that the spot variance follows 
  a Cox-Ingersoll-Ross model.<div class="programlisting"><div class="codeinput"><pre class="matlab-code">% Heston model simulation
@@ -60,7 +60,7 @@
 xlabel('tau'); 
 title('Spot volatility estimates Vs Actual values')
 legend('Actual values','Estimated values')</pre></div></div><pre class="codeoutput">WARNING: estimation will be performed on the equally-spaced grid with mesh size equal to T/(2*M), provided as an output variable.
-</pre><a href='http://rosa.unipr.it/fsda/FM_spot_vol.html#Example_3'><img vspace="5" hspace="5" src="images\FM_spot_vol_04.png" alt="Click here for the graphical output of this example (link to Ro.S.A. website)."> <img vspace="5" hspace="5" src="images\FM_spot_vol_05.png" alt=""> </a></p></div></div></div><p> </p></div></div></div><div class="ref_sect" itemprop="content"><h2 id="Inputs">Input Arguments</h2><div class="expandableContent"><div class="arguments"><div class="input_argument_container"><p class="switch"><a class="expandAllLink" href="javascript:void(0);">expand all</a></p><div class="expandableContent"> <div id="inputarg_x" class="clearfix"> </div> <h3 id="input_argument_x" class="expand"> <span> <a href="javascript:void(0);" style="display: block;" title="Expand/Collapse"> <span class="argument_name"><code>x</code> &#8212; Observed process values. </span>  </a><span class="example_desc">Vector.</span></span></h3> <div class="collapse"> <p>Row or column vector containing
+</pre><a href='http://rosa.unipr.it/fsda/FM_spot_vol.html#Example_3'><img vspace="5" hspace="5" src="images\FM_spot_vol_03.png" alt="Click here for the graphical output of this example (link to Ro.S.A. website)."> </a></p></div></div></div><p> </p></div></div></div><div class="ref_sect" itemprop="content"><h2 id="Inputs">Input Arguments</h2><div class="expandableContent"><div class="arguments"><div class="input_argument_container"><p class="switch"><a class="expandAllLink" href="javascript:void(0);">expand all</a></p><div class="expandableContent"> <div id="inputarg_x" class="clearfix"> </div> <h3 id="input_argument_x" class="expand"> <span> <a href="javascript:void(0);" style="display: block;" title="Expand/Collapse"> <span class="argument_name"><code>x</code> &#8212; Observed process values. </span>  </a><span class="example_desc">Vector.</span></span></h3> <div class="collapse"> <p>Row or column vector containing
               the observed values.</p> <p class="datatypelist"><strong> Data Types: </strong><code>single| double</code></p> </div> </div><div class="expandableContent"> <div id="inputarg_t" class="clearfix"> </div> <h3 id="input_argument_t" class="expand"> <span> <a href="javascript:void(0);" style="display: block;" title="Expand/Collapse"> <span class="argument_name"><code>t</code> &#8212; Observation times. </span>  </a><span class="example_desc">Vector.</span></span></h3> <div class="collapse"> <p>Row or column vector with the same
               length of x containing the observation times.</p> <p class="datatypelist"><strong> Data Types: </strong><code>single| double</code></p> </div> </div><div class="expandableContent"> <div id="inputarg_T" class="clearfix"> </div> <h3 id="input_argument_T" class="expand"> <span> <a href="javascript:void(0);" style="display: block;" title="Expand/Collapse"> <span class="argument_name"><code>T</code> &#8212; Estimation horizon. </span>  </a><span class="example_desc">Scalar.</span></span></h3> <div class="collapse"> <p></p> <p class="datatypelist"><strong> Data Types: </strong><code>single| double</code></p> </div> </div><div id="namevaluepairarguments" class="clearfix"></div><h3 id="NameValuePairs" class="bottom_ruled">Name-Value Pair Arguments</h3><div class="namevaluecontainer"><p>Specify optional comma-separated pairs of <code>Name,Value</code> arguments. <code>Name</code> is the argument name and <code>Value</code> is the corresponding value. <code>Name</code> must appear  inside single quotes (<code>' '</code>).  You can specify several name and value pair arguments in any order as <code>  Name1,Value1,...,NameN,ValueN</code>.</p>  <span class="example_desc"><strong>Example:</strong><code><code> 'N',400
 </code>,<code> 'M',20

toolbox/helpfiles/FSDA/FM_spot_volvol.html

@@ -42,7 +42,7 @@
 plot(tau_out,VV_spot); 
 xlabel('tau'); 
 title('Spot volatility of volatility estimates Vs Actual values')
-legend('Actual values','Estimated values')</pre></div></div><a href='http://rosa.unipr.it/fsda/FM_spot_volvol.html#Example_2'><img vspace="5" hspace="5" src="images\FM_spot_volvol_02.png" alt="Click here for the graphical output of this example (link to Ro.S.A. website)."> </a></p></div></div><div id="example_3" class="example_module expandableContent"><div id="Example_3"></div><h3 class="expand"><span><a href="javascript:void(0);" style="display: block;" title="Expand/Collapse"><span class="example_title"> <li><img alt="" src="images_help/M.gif" style="width: 12px; height: 12px"> Example of call of FM_spot_volvol when tau has length larger than 2L &plus; 1.</li></span></a></span></h3><div class="collapse"><p>
+legend('Actual values','Estimated values')</pre></div></div><a href='http://rosa.unipr.it/fsda/FM_spot_volvol.html#Example_2'><img vspace="5" hspace="5" src="images\FM_spot_volvol_02.png" alt="Click here for the graphical output of this example (link to Ro.S.A. website)."> <img vspace="5" hspace="5" src="images\FM_spot_volvol_03.png" alt=""> </a></p></div></div><div id="example_3" class="example_module expandableContent"><div id="Example_3"></div><h3 class="expand"><span><a href="javascript:void(0);" style="display: block;" title="Expand/Collapse"><span class="example_title"> <li><img alt="" src="images_help/M.gif" style="width: 12px; height: 12px"> Example of call of FM_spot_volvol when tau has length larger than 2L &plus; 1.</li></span></a></span></h3><div class="collapse"><p>
      The following example estimates the daily path of the spot volatility of volatility
      of a random process following the Heston model from a discrete sample.  
      The Heston model assumes that the spot variance follows 
@@ -66,7 +66,7 @@
 xlabel('tau'); 
 title('Spot volatility of volatility estimates Vs Actual values')
 legend('Actual values','Estimated values')</pre></div></div><pre class="codeoutput">WARNING: estimation will be performed on the equally-spaced grid with mesh size equal to T/(2*L), provided as an output variable.
-</pre><a href='http://rosa.unipr.it/fsda/FM_spot_volvol.html#Example_3'><img vspace="5" hspace="5" src="images\FM_spot_volvol_03.png" alt="Click here for the graphical output of this example (link to Ro.S.A. website)."> <img vspace="5" hspace="5" src="images\FM_spot_volvol_04.png" alt=""> </a></p></div></div></div><p> </p></div></div></div><div class="ref_sect" itemprop="content"><h2 id="Inputs">Input Arguments</h2><div class="expandableContent"><div class="arguments"><div class="input_argument_container"><p class="switch"><a class="expandAllLink" href="javascript:void(0);">expand all</a></p><div class="expandableContent"> <div id="inputarg_x" class="clearfix"> </div> <h3 id="input_argument_x" class="expand"> <span> <a href="javascript:void(0);" style="display: block;" title="Expand/Collapse"> <span class="argument_name"><code>x</code> &#8212; Observed process values. </span>  </a><span class="example_desc">Vector.</span></span></h3> <div class="collapse"> <p>Row or column vector containing
+</pre><a href='http://rosa.unipr.it/fsda/FM_spot_volvol.html#Example_3'><img vspace="5" hspace="5" src="images\FM_spot_volvol_04.png" alt="Click here for the graphical output of this example (link to Ro.S.A. website)."> <img vspace="5" hspace="5" src="images\FM_spot_volvol_05.png" alt=""> </a></p></div></div></div><p> </p></div></div></div><div class="ref_sect" itemprop="content"><h2 id="Inputs">Input Arguments</h2><div class="expandableContent"><div class="arguments"><div class="input_argument_container"><p class="switch"><a class="expandAllLink" href="javascript:void(0);">expand all</a></p><div class="expandableContent"> <div id="inputarg_x" class="clearfix"> </div> <h3 id="input_argument_x" class="expand"> <span> <a href="javascript:void(0);" style="display: block;" title="Expand/Collapse"> <span class="argument_name"><code>x</code> &#8212; Observed process values. </span>  </a><span class="example_desc">Vector.</span></span></h3> <div class="collapse"> <p>Row or column vector containing
              the observed values.</p> <p class="datatypelist"><strong> Data Types: </strong><code>single| double</code></p> </div> </div><div class="expandableContent"> <div id="inputarg_t" class="clearfix"> </div> <h3 id="input_argument_t" class="expand"> <span> <a href="javascript:void(0);" style="display: block;" title="Expand/Collapse"> <span class="argument_name"><code>t</code> &#8212; Observation times. </span>  </a><span class="example_desc">Vector.</span></span></h3> <div class="collapse"> <p>Row or column vector with the same
              length of x containing the observation times.</p> <p class="datatypelist"><strong> Data Types: </strong><code>single| double</code></p> </div> </div><div class="expandableContent"> <div id="inputarg_T" class="clearfix"> </div> <h3 id="input_argument_T" class="expand"> <span> <a href="javascript:void(0);" style="display: block;" title="Expand/Collapse"> <span class="argument_name"><code>T</code> &#8212; Estimation horizon. </span>  </a><span class="example_desc">Scalar.</span></span></h3> <div class="collapse"> <p></p> <p class="datatypelist"><strong> Data Types: </strong><code>single| double</code></p> </div> </div><div id="namevaluepairarguments" class="clearfix"></div><h3 id="NameValuePairs" class="bottom_ruled">Name-Value Pair Arguments</h3><div class="namevaluecontainer"><p>Specify optional comma-separated pairs of <code>Name,Value</code> arguments. <code>Name</code> is the argument name and <code>Value</code> is the corresponding value. <code>Name</code> must appear  inside single quotes (<code>' '</code>).  You can specify several name and value pair arguments in any order as <code>  Name1,Value1,...,NameN,ValueN</code>.</p>  <span class="example_desc"><strong>Example:</strong><code><code> 'N',400
 </code>,<code> 'M',20