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Expand Up @@ -9,147 +9,150 @@ document updated once a week or whenever there’s a push or pull request.
It performs a search on PubMed looking for the <a
href="https://pubmed.ncbi.nlm.nih.gov/?term=agent-based+model&amp;sort=date"
target="_blank">latest papers about Agent-Based Models</a>. The last
update was on 2024-09-15 00:50:07.
update was on 2024-09-22 00:50:17.

<div class="cell">

</div>

1. **An Agent-Based Method for Feature Recognition and Path
Optimization of Computer Numerical Control Machining Trajectories.**
1. **Revisiting the impact of Schistosoma mansoni regulating mechanisms
on transmission dynamics using SchiSTOP, a novel modelling
framework.**

Li P, Chen M, Ji C, Zhou Z, Lin X, Yu D.
Malizia V, de Vlas SJ, Roes KCB, Giardina F.

Sensors (Basel). 2024 Sep 3;24(17):5720. doi: 10.3390/s24175720.
PLoS Negl Trop Dis. 2024 Sep 20;18(9):e0012464. doi:
10.1371/journal.pntd.0012464. eCollection 2024 Sep.

> To address these issues, this paper proposes a method for CNC
> system machining trajectory feature recognition and path
> optimization based on intelligent agents. This method employs
> intelligent agents to construct models and analyze the key
> geometric information in the G-co
> METHODOLOGY/PRINCIPAL FINDINGS: We developed SchiSTOP: a hybrid
> stochastic agent-based and deterministic modelling framework
> for S. mansoni transmission in an age-structured human population.
> …However, the predicted probability of reaching the control targe
>
2. **Agent-Based Modeling of Virtual Tumors Reveals the Critical
Influence of Microenvironmental Complexity on Immunotherapy
Efficacy.**
2. **A picit jeu: Agent-based modelling with serious gaming for a
fire-resilient landscape.**

Wang Y, Bergman DR, Trujillo E, Fernald AA, Li L, Pearson AT, Sweis
RF, Jackson TL.
Vigna I, Millington J, Ascoli D, Comino E, Pezzoli A, Besana A.

Cancers (Basel). 2024 Aug 23;16(17):2942. doi:
10.3390/cancers16172942.
J Environ Manage. 2024 Sep 18;370:122529. doi:
10.1016/j.jenvman.2024.122529. Online ahead of print.

> Nonetheless, ODEs cannot describe the spatial structure in the
> tumor microenvironment or quantify the influence of
> spatially-dependent characteristics of tumor-immune dynamics. For
> these reasons, agent-based models (ABMs) have gained popularity
> because they c …
> We present and discuss a methodology combining agent-based
> modelling with a role-playing game. It was tested in a valley of
> the Italian Alps, involving 23 local stakeholders in forest and
> pasture management in three game sessions. …
3. **Spatially fractionated GRID radiation potentiates immune-mediated
tumor control.**
3. **Interplay of network structure and talent configuration on wealth
dynamics.**

Bekker RA, Obertopp N, Redler G, Penagaricano J, Caudell JJ, Yamoah
K, Pilon-Thomas S, Moros EG, Enderling H.
Hur J, Ha M, Jeong H.

Radiat Oncol. 2024 Sep 13;19(1):121. doi:
10.1186/s13014-024-02514-6.
Phys Rev E. 2024 Aug;110(2-1):024312. doi:
10.1103/PhysRevE.110.024312.

> It is thus conceivable that spatially fractionated radiotherapy
> (SFRT), administered through GRID blocks (SFRT-GRID) or lattice
> radiotherapy to create areas of low or high dose exposure, may
> create protective reservoirs of the tumor immune microenvironment,
> thereby preserving ant
> The economic success of individuals is often determined by a
> combination of talent, luck, and assistance from others. We
> introduce an agent-based model that simultaneously considers
> talent, luck, and social interaction. This model allows us to
> explore
4. **A generalized numerical model for clonal growth in scleractinian
coral colonies.**
4. **Modelling patient trajectories in emergency department simulations
using retrospective patient cohorts.**

Llabrés E, Re E, Pluma N, Sintes T, Duarte CM.
Delos Reyes R, Capurro D, Geard N.

Proc Biol Sci. 2024 Sep;291(2030):20241327. doi:
10.1098/rspb.2024.1327. Epub 2024 Sep 13.
Comput Biol Med. 2024 Sep 17;182:109147. doi:
10.1016/j.compbiomed.2024.109147. Online ahead of print.

> Although the principles of coral clonal growth, involving polyp
> division for spatial extension, are well-understood, numerical
> modelling efforts are notably scarce in the literature. In this
> article, we present a parsimonious numerical model based on the
> cloning of
> Here, we propose a data-driven ED simulation model in which
> patient trajectories are modelled based on both acuity and
> retrospective patient indicators. …Our work exemplifies how we can
> better utilise ED data to make the development and evaluation of
> ED simulation
5. **Walk this way: modeling foraging ant dynamics in multiple food
source environments.**
5. **Co-evolving networks for opinion and social dynamics in
agent-based models.**

Hartman S, Ryan SD, Karamched BR.
Djurdjevac Conrad N, Quang Vu N, Nagel S.

J Math Biol. 2024 Sep 12;89(4):41. doi: 10.1007/s00285-024-02136-2.
Chaos. 2024 Sep 1;34(9):093116. doi: 10.1063/5.0226054.

> What makes this process so fascinating is the self-organization of
> ants into trails using chemical pheromone in the absence of direct
> communication. Here we present a stochastic lattice model that
> captures essential features of foraging ant dynamics inspired by
> recent a
> In this work, we address this gap, by introducing the co-evolving
> opinion and social dynamics using stochastic agent-based models.
> Agents’ mobility in a social space is governed by both their
> social and opinion similarity with others. …Our findings highligh
>
6. **A quantitative study of the effects of a dual layer coating
drug-eluting stent on safety and efficacy.**
6. **Measuring and understanding information storage and transfer in a
simulated human gut microbiome.**

Guo B, Chen S, Zhang Y, Yang Y, Song H, Zhang Y, Du T, Qiao A.
Zoller H, Garcia Perez C, Betel Geijo Fernández J, Zu Castell W.

J Biomech. 2024 Sep 4;176:112304. doi:
10.1016/j.jbiomech.2024.112304. Online ahead of print.
PLoS Comput Biol. 2024 Sep 17;20(9):e1012359. doi:
10.1371/journal.pcbi.1012359. eCollection 2024 Sep.

> This framework consisted of four coupled modules, namely (1) a
> mechanical stimuli module, simulating mechanical stimuli caused by
> percutaneous coronary intervention through a finite element
> analysis, (2) an inflammation module, simulating inflammation of
> vascular smooth muscle ce …
> We transfer this framework to a field of broad general interest,
> the human gut microbiome. We use BacArena, a software combining
> agent-based modelling and flux-balance analysis, to simulate a
> simplified human intestinal microbiome (SIHUMI). …
7. **Smartboard: Visual Exploration of Team Tactics with LLM Agent.**
7. **Bayesian Calibration to Address the Challenge of Antimicrobial
Resistance: A Review.**

Liu Z, Xie X, He M, Zhao W, Wu Y, Cheng L, Zhang H, Wu Y.
Rosato C, Green PL, Harris J, Maskell S, Hope W, Gerada A, Howard A.

IEEE Trans Vis Comput Graph. 2024 Sep 10;PP. doi:
10.1109/TVCG.2024.3456200. Online ahead of print.
IEEE Access. 2024;12:100772-100791. doi:
10.1109/ACCESS.2024.3427410.

> We develop an extensible framework that integrates large language
> models (LLMs) and visualizations to help users communicate with
> the coach agent with multimodal inputs. Based on the framework, we
> design and develop Smartboard, an agent-based interactive visu
> These inference algorithms are instrumental in calibrating complex
> statistical models to the vast amounts of AMR-related data.
> Popular statistical models include hierarchical and mixture models
> as well as discrete and stochastic epidemiological compartmental
8. **Is the Run, Hide, Fight Concept Effective in Improving Hospital
Response to Shooting Incidents? A Systematic Review.**
8. **An Agent-Based Method for Feature Recognition and Path
Optimization of Computer Numerical Control Machining Trajectories.**

Rummaneethorn N, Taubman C, Adamakos F.
Li P, Chen M, Ji C, Zhou Z, Lin X, Yu D.

Disaster Med Public Health Prep. 2024 Sep 9;18:e111. doi:
10.1017/dmp.2024.78.
Sensors (Basel). 2024 Sep 3;24(17):5720. doi: 10.3390/s24175720.

> The measurements were subjective evaluations and survival
> probabilities post-concept. One agent-based modeling study
> suggested a high survival probability in non-medical settings. …
> This method employs intelligent agents to construct models and
> analyze the key geometric information in the G-code generated
> during CNC machining, and it uses the MCRL deep learning model
> incorporating linear attention mechanisms and multiple neural
> networks for rec …
9. **Epidemiological Consequences of Individual Centrality on Wild
Chimpanzees.**
9. **Agent-Based Modeling of Virtual Tumors Reveals the Critical
Influence of Microenvironmental Complexity on Immunotherapy
Efficacy.**

Pierron M, Sueur C, Shimada M, MacIntosh AJJ, Romano V.
Wang Y, Bergman DR, Trujillo E, Fernald AA, Li L, Pearson AT, Sweis
RF, Jackson TL.

Am J Primatol. 2024 Sep 8:e23682. doi: 10.1002/ajp.23682. Online
ahead of print.
Cancers (Basel). 2024 Aug 23;16(17):2942. doi:
10.3390/cancers16172942.

> In this study, we built a party network from wild chimpanzees (Pan
> troglodytes), and used agent-based modeling to test: (i) whether
> individual attributes (sex, age) predict individual centrality
> (i.e., whether it is more or less socially connected); (ii) whet …
> Nonetheless, ODEs cannot describe the spatial structure in the
> tumor microenvironment or quantify the influence of
> spatially-dependent characteristics of tumor-immune dynamics. For
> these reasons, agent-based models (ABMs) have gained popularity
> because they c …
10. **Interplay of virulence factors shapes ecology and treatment
outcomes in polymicrobial infections.**
10. **Spatially fractionated GRID radiation potentiates immune-mediated
tumor control.**

Herzberg C, van Meegen EN, van Hasselt JGC.
Bekker RA, Obertopp N, Redler G, Penagaricano J, Caudell JJ, Yamoah
K, Pilon-Thomas S, Moros EG, Enderling H.

Math Biosci. 2024 Sep 6;377:109293. doi: 10.1016/j.mbs.2024.109293.
Online ahead of print.
Radiat Oncol. 2024 Sep 13;19(1):121. doi:
10.1186/s13014-024-02514-6.

> The aim of this study was to assess how bacterial virulence
> factors targeting neutrophil function influence ecology and
> treatment outcomes of PMIs. An agent-based model was constructed
> which describes a dual-species bacterial population in the
> presence of neu
> It is thus conceivable that spatially fractionated radiotherapy
> (SFRT), administered through GRID blocks (SFRT-GRID) or lattice
> radiotherapy to create areas of low or high dose exposure, may
> create protective reservoirs of the tumor immune microenvironment,
> thereby preserving ant
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