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Merge remote-tracking branch 'origin/master'
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marioernestovaldes committed May 2, 2021
2 parents 300468c + 396d3d2 commit 77748b8
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2 changes: 2 additions & 0 deletions GMXMMPBSA/main.py
Original file line number Diff line number Diff line change
Expand Up @@ -957,6 +957,8 @@ def check_for_bad_input(self, INPUT=None):
# https://github.com/Valdes-Tresanco-MS/gmx_MMPBSA/issues/33
if self.INPUT['startframe'] < 1:
GMXMMPBSA_ERROR('The startframe variable must be >= 1')
if self.INPUT['nmstartframe'] < 1:
GMXMMPBSA_ERROR('The nmstartframe variable must be >= 1')

# check files
if self.FILES.complex_top:
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6 changes: 3 additions & 3 deletions docs/changelog.md
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Expand Up @@ -4,14 +4,14 @@ title: Changelog
---

# Changelog
## Upcoming release
## [gxm_MMPBSA v1.4.2 (01/05/2021)](https://github.com/Valdes-Tresanco-MS/gmx_MMPBSA/releases/tag/v1.4.2)
### Additions
- Added Covid-19 and other complex systems as examples in the documentation
- Added Q&A section to the documentation
- Implemented an adaptive `intdiel`(GB)/`indi`(PB) for Alanine scanning (Check the [input file](input_file.md#alanine_scanning-namelist-variables) section)

### Fixes
- Fixed bug when `starframe` = 0 (#33)
- Fixed bug when `startframe = 0` (#33)
- Fixed bug when blank lines exist in [molecule] section in topology file
- Fixed pipe command-line for Gromacs execution in macOS
- Fixed compatibility issues with v1.3.x
Expand All @@ -22,7 +22,7 @@ title: Changelog
### Changes
- Changed `protein_forcefields` and `ligand_forcefield` by `forcefields` variable in all examples
- Now QH and IE can be calculated at the same time
- `entropy` variable was separated in `qh_entropy` and `interaction_entropy`. _The `entropy` variable is deprecated
- `entropy` variable was separated in `qh_entropy` and `interaction_entropy`. _The `entropy` variable is deprecated
and will be removed in the next version (v1.5.0)._
- `entropy_seg` was replaced by `ie_segment`. _The `entropy_seg` variable is deprecated and will be removed in the
next version (v1.5.0)._
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