moved primer scoring into sample data

VascoElbrecht · Sep 1, 2016 · e0a9189 · e0a9189
1 parent 3b29506
commit e0a9189
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Showing 10 changed files with 1 addition and 1 deletion.
diff --git a/.DS_Store b/.DS_Store
diff --git a/PrimerMiner/.DS_Store b/PrimerMiner/.DS_Store
diff --git a/PrimerMiner/R/.DS_Store b/PrimerMiner/R/.DS_Store
diff --git a/PrimerMiner/inst/.DS_Store b/PrimerMiner/inst/.DS_Store
diff --git a/PrimerMiner/man/.DS_Store b/PrimerMiner/man/.DS_Store
diff --git a/Sample_Data/.DS_Store b/Sample_Data/.DS_Store
diff --git a/Sample_Data/package_tutorial.R b/Sample_Data/package_tutorial.R
@@ -32,7 +32,7 @@ dev.off()
 
 # in silico primer evaluation
 
-evaluate_primer("1 COi alignments/01_Plecoptera_folmer.fasta", "GCYCCHGAYATRGCHTTYCC", 218, 237, save="save_evaluation_table.csv", mm_position ="../primer_scoring/Position_v1.csv", adjacent=2, mm_type="../primer_scoring/Type_v1.csv") 
+evaluate_primer("1 COi alignments/01_Plecoptera_folmer.fasta", "GCYCCHGAYATRGCHTTYCC", 218, 237, save="save_evaluation_table.csv", mm_position ="primer_scoring/Position_v1.csv", adjacent=2, mm_type="primer_scoring/Type_v1.csv") 
 
 
 

diff --git a/Sample_Data/primer_scoring/.DS_Store b/Sample_Data/primer_scoring/.DS_Store
diff --git a/primer_scoring/Position_v1.csv → Sample_Data/primer_scoring/Position_v1.csv b/primer_scoring/Position_v1.csv → Sample_Data/primer_scoring/Position_v1.csv
diff --git a/primer_scoring/Type_v1.csv → Sample_Data/primer_scoring/Type_v1.csv b/primer_scoring/Type_v1.csv → Sample_Data/primer_scoring/Type_v1.csv
Original file line number	Diff line number	Diff line change
Expand Up		@@ -32,7 +32,7 @@ dev.off()

		# in silico primer evaluation

		evaluate_primer("1 COi alignments/01_Plecoptera_folmer.fasta", "GCYCCHGAYATRGCHTTYCC", 218, 237, save="save_evaluation_table.csv", mm_position ="../primer_scoring/Position_v1.csv", adjacent=2, mm_type="../primer_scoring/Type_v1.csv")
		evaluate_primer("1 COi alignments/01_Plecoptera_folmer.fasta", "GCYCCHGAYATRGCHTTYCC", 218, 237, save="save_evaluation_table.csv", mm_position ="primer_scoring/Position_v1.csv", adjacent=2, mm_type="primer_scoring/Type_v1.csv")



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